C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: acyl-CoA synthetase long-chain family member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032883 Acsl3 10090 + 1:78657825-78707743 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035779 Acsl3-001 78657825-78707743 protein_coding
  ENSMUST00000132997 Acsl3-006 78681940-78692349 retained_intron
  ENSMUST00000134566 Acsl3-002 78657883-78706901 protein_coding
  ENSMUST00000135642 Acsl3-004 78670893-78688282 protein_coding
  ENSMUST00000142704 Acsl3-003 78657883-78706967 protein_coding
  ENSMUST00000148608 Acsl3-007 78696656-78701289 retained_intron
  ENSMUST00000154777 Acsl3-005 78690263-78697029 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035779ENSMUST00000132997ENSMUST00000134566ENSMUST00000142704ENSMUST00000148608ENSMUST00000154777
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035779 1.501±0.58 1.678±0.17 1.233±0.01 4.273±0.25 1.297±0.20 15.394±4.71 0.311±0.10 1.503±0.61 1.763±0.46 1.974±0.92 0.958±0.28 2.981±1.81 3.461±1.10 3.912±2.01
ENSMUST00000132997 N/A N/A N/A N/A 3.860±0.00 N/A N/A N/A N/A N/A N/A 6.913±0.00 N/A N/A
ENSMUST00000134566 0.743±0.00 N/A 2.914±0.41 23.699±0.00 2.721±1.15 N/A 0.575±0.00 1.673±0.56 1.845±0.00 1.274±0.45 2.865±0.58 7.985±4.90 15.291±10.77 5.459±3.19
ENSMUST00000142704 1.477±0.36 1.971±0.43 5.595±1.29 10.041±0.77 1.009±0.07 10.483±5.07 0.550±0.18 1.832±0.65 5.105±2.53 2.167±0.73 2.908±1.00 3.034±2.00 10.301±3.62 2.573±0.00
ENSMUST00000148608 N/A N/A N/A N/A N/A N/A 1.378±0.00 4.984±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000154777 2.205±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XK CIL_0006XK_0002 CGP 1:78510991-78707743

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004467 IEA long-chain fatty acid-CoA ligase activity
GO:0005524 IEA ATP binding
GO:0005741 IEA mitochondrial outer membrane
GO:0005777 IEA peroxisome
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005811 IEA lipid particle
GO:0006633 IEA fatty acid biosynthetic process
GO:0007420 IEA brain development
GO:0007584 IEA response to nutrient
GO:0014070 IEA response to organic cyclic compound
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019901 IEA protein kinase binding
GO:0019904 IEA protein domain specific binding
GO:0034379 IEA very-low-density lipoprotein particle assembly
GO:0042998 IEA positive regulation of Golgi to plasma membrane protein transport
GO:0044539 IEA long-chain fatty acid import
GO:0048471 IEA perinuclear region of cytoplasm
GO:0051047 IEA positive regulation of secretion
GO:2001247 IEA positive regulation of phosphatidylcholine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014674 acsl3b acyl-CoA synthetase long-chain family member 3b protein_coding Danio_rerio
ENSDARG00000032079 acsl3a acyl-CoA synthetase long-chain family member 3a protein_coding Danio_rerio
ENSG00000123983 ACSL3 acyl-CoA synthetase long-chain family member 3 protein_coding Homo_sapiens

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