C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: 2-oxoglutarate and iron-dependent oxygenase domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033009 Ogfod1 10090 + 8:94037198-94067921 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000060632 Ogfod1-004 94037291-94067921 protein_coding
  ENSMUST00000093301 Ogfod1-002 94037238-94067921 protein_coding
  ENSMUST00000109556 Ogfod1-001 94037198-94067921 protein_coding
  ENSMUST00000127634 Ogfod1-005 94037263-94057779 processed_transcript
  ENSMUST00000141636 Ogfod1-003 94037260-94039452 retained_intron
  ENSMUST00000145717 Ogfod1-006 94055059-94057780 retained_intron
  ENSMUST00000172674 Ogfod1-007 94037296-94056111 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060632ENSMUST00000093301ENSMUST00000109556
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060632 0.953±0.05 1.810±0.32 N/A 0.514±0.00 2.133±0.88 0.749±0.30 1.209±0.00 0.498±0.00 0.689±0.11 N/A N/A 2.065±1.27 1.052±0.00 N/A
ENSMUST00000093301 N/A N/A N/A 4.969±0.00 N/A 0.445±0.00 N/A N/A 0.444±0.19 0.550±0.04 N/A 0.773±0.00 1.360±0.39 N/A
ENSMUST00000109556 2.752±1.02 0.855±0.00 5.793±0.72 2.924±0.93 1.926±0.86 1.803±0.31 2.437±0.41 1.668±0.56 1.778±0.84 1.938±0.64 5.113±0.32 2.021±0.94 3.693±1.76 2.648±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00048W CIL_00048W_0002 CGP 8:94017770-94067921
CIL_00048V CIL_00048V_0002 CGP 8:94037198-94098811

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006449 ISS regulation of translational termination
GO:0008283 ISS cell proliferation
GO:0010494 ISS cytoplasmic stress granule
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0018126 ISS protein hydroxylation
GO:0019511 IEA peptidyl-proline hydroxylation
GO:0031418 IEA L-ascorbic acid binding
GO:0031543 ISS peptidyl-proline dioxygenase activity
GO:0031544 ISS peptidyl-proline 3-dioxygenase activity
GO:0034063 ISS stress granule assembly
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036061 ogfod1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 protein_coding Danio_rerio
ENSG00000087263 OGFOD1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 protein_coding Homo_sapiens

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