C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 2-oxoglutarate and iron-dependent oxygenase domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109556 Ogfod1-001 ENSMUSG00000033009 10090 + 8:94037198-94067921 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109556
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109556 2.752±1.02 0.855±0.00 5.793±0.72 2.924±0.93 1.926±0.86 1.803±0.31 2.437±0.41 1.668±0.56 1.778±0.84 1.938±0.64 5.113±0.32 2.021±0.94 3.693±1.76 2.648±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00048W CIL_00048W_0002 CGP 8:94017770-94067921
CIL_00048V CIL_00048V_0002 CGP 8:94037198-94098811

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006449 ISS regulation of translational termination
GO:0008283 ISS cell proliferation
GO:0010494 ISS cytoplasmic stress granule
GO:0018126 ISS protein hydroxylation
GO:0019511 IEA peptidyl-proline hydroxylation
GO:0031418 IEA L-ascorbic acid binding
GO:0031543 ISS peptidyl-proline dioxygenase activity
GO:0031544 ISS peptidyl-proline 3-dioxygenase activity
GO:0034063 ISS stress granule assembly
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264952 GRK7-001 protein_coding Homo_sapiens 0.000005 58
ENST00000279147 ORAOV1-001 protein_coding Homo_sapiens 0.000003 58
ENST00000336111 OGFOD1-002 nonsense_mediated_decay Homo_sapiens 0 1277
ENST00000447552 OGFOD1P1-001 processed_pseudogene Homo_sapiens 0 1094
ENST00000470332 TAP1-002 retained_intron Homo_sapiens 0.000004 58
ENST00000470845 TAP1-002 retained_intron Homo_sapiens 0.000004 58
ENST00000483345 TAP1-002 retained_intron Homo_sapiens 0.000004 58
ENST00000486332 TAP1-002 retained_intron Homo_sapiens 0.000004 58
ENST00000489513 TAP1-002 retained_intron Homo_sapiens 0.000004 58
ENST00000489659 TAP1-002 retained_intron Homo_sapiens 0.000004 58
ENST00000493421 TAP1-002 retained_intron Homo_sapiens 0.000004 58
ENST00000498427 TAP1-002 retained_intron Homo_sapiens 0.000004 58
ENST00000536870 ORAOV1-004 protein_coding Homo_sapiens 0.000003 58
ENST00000537272 ORAOV1-010 protein_coding Homo_sapiens 0.000001 58
ENST00000544096 ORAOV1-002 retained_intron Homo_sapiens 0.000005 58
ENST00000561646 OGFOD1-009 protein_coding Homo_sapiens 0 606
ENST00000562150 OGFOD1-011 protein_coding Homo_sapiens 0 499
ENST00000563733 OGFOD1-005 retained_intron Homo_sapiens 0 377
ENST00000564123 BBS2-021 protein_coding Homo_sapiens 1e-32 143
ENST00000565682 OGFOD1-010 nonsense_mediated_decay Homo_sapiens 0 324
ENST00000566157 OGFOD1-001 protein_coding Homo_sapiens 0 1594
ENST00000568172 OGFOD1-008 processed_transcript Homo_sapiens 0 372
ENST00000568397 OGFOD1-003 protein_coding Homo_sapiens 0 726
ENST00000569645 OGFOD1-004 retained_intron Homo_sapiens 0 324
ENST00000569802 OGFOD1-007 nonsense_mediated_decay Homo_sapiens 1.99993e-41 172

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