C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 1700088E04 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033029 1700088E04Rik 10090 - 15:79129349-79141253 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000169604 1700088E04Rik-001 79134661-79141253 protein_coding
  ENSMUST00000185944 1700088E04Rik-007 79129349-79134916 processed_transcript
  ENSMUST00000186053 1700088E04Rik-002 79137423-79141253 protein_coding
  ENSMUST00000186459 1700088E04Rik-005 79137132-79141203 nonsense_mediated_decay
  ENSMUST00000186559 1700088E04Rik-006 79135009-79136713 processed_transcript
  ENSMUST00000187550 1700088E04Rik-008 79134655-79141187 protein_coding
  ENSMUST00000188562 1700088E04Rik-012 79135056-79141205 protein_coding
  ENSMUST00000189761 1700088E04Rik-009 79135082-79141182 nonsense_mediated_decay
  ENSMUST00000190400 1700088E04Rik-013 79137425-79140978 protein_coding
  ENSMUST00000190509 1700088E04Rik-011 79134992-79141230 protein_coding
  ENSMUST00000190730 1700088E04Rik-010 79135017-79141234 protein_coding
  ENSMUST00000190959 1700088E04Rik-003 79134655-79141239 protein_coding
  ENSMUST00000191006 1700088E04Rik-014 79137420-79139275 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastKidneyLungMuscleOvaryPlacentaTestisENSMUST00000169604ENSMUST00000185944ENSMUST00000186559ENSMUST00000187550
Transcript ID Brain Breast Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000169604 N/A N/A 8.238±0.30 13.298±1.23 N/A 14.445±0.12 N/A 49.914±3.86
ENSMUST00000185944 4.422±0.00 N/A N/A N/A N/A N/A 6.321±0.76 15.538±0.00
ENSMUST00000186559 N/A 10.747±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000187550 N/A N/A N/A N/A 2.861±0.21 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00082J CIL_00082J_0002 VISTA 15:78908803-79509777
CIL_0008C1 CIL_0008C1_0002 VISTA 15:78918952-79520098
CIL_00082K CIL_00082K_0002 VISTA 15:78923635-79524085
CIL_0008MM CIL_0008MM_0002 VISTA 15:79023554-79624112
CIL_0003QI CIL_0003QI_0002 CGP 15:79075223-79136897
CIL_0006F9 CIL_0006F9_0003 CGP 15:79108972-79141253
CIL_0003QJ CIL_0003QJ_0002 CGP 15:79129349-79151774

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052428 C6H22orf23 chromosome 22 open reading frame 23 protein_coding Danio_rerio
ENSG00000128346 C22orf23 chromosome 22 open reading frame 23 protein_coding Homo_sapiens

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