C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lanosterol synthase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033105 Lss 10090 + 10:76531588-76557138 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048678 Lss-001 76531607-76555479 protein_coding
  ENSMUST00000159013 Lss-005 76531588-76535568 processed_transcript
  ENSMUST00000159172 Lss-006 76531682-76535723 retained_intron
  ENSMUST00000160671 Lss-002 76531612-76557138 retained_intron
  ENSMUST00000162282 Lss-008 76552271-76553233 retained_intron
  ENSMUST00000162475 Lss-003 76531607-76548868 retained_intron
  ENSMUST00000162848 Lss-004 76551210-76556618 retained_intron
  ENSMUST00000163049 Lss-007 76541882-76542746 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048678ENSMUST00000159013ENSMUST00000160671ENSMUST00000162475ENSMUST00000162848
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048678 10.062±2.81 16.809±4.30 3.814±1.67 6.238±2.04 9.744±2.36 10.711±2.44 0.687±0.21 4.975±1.67 15.291±10.95 8.989±1.58 0.235±0.05 12.148±3.62 6.510±4.26 3.420±1.20
ENSMUST00000159013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 42.880±8.52 N/A
ENSMUST00000160671 N/A N/A N/A 2.228±1.06 N/A N/A 0.135±0.00 N/A 2.903±0.00 N/A 0.174±0.09 N/A 2.705±0.47 N/A
ENSMUST00000162475 N/A 4.147±0.55 N/A 2.599±0.00 N/A 2.091±0.00 0.250±0.00 N/A N/A 2.424±0.00 0.283±0.00 3.100±0.22 N/A N/A
ENSMUST00000162848 2.460±0.10 4.980±0.00 1.742±0.23 3.734±1.16 2.859±0.63 2.589±0.00 0.298±0.09 1.391±0.23 4.649±1.14 2.804±0.28 0.230±0.06 3.047±0.70 2.532±0.00 1.812±0.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001DU CIL_0001DU_0002 CGP 10:76468971-76557138

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000250 IEA lanosterol synthase activity
GO:0005783 IEA endoplasmic reticulum
GO:0005811 IEA lipid particle
GO:0006695 IEA cholesterol biosynthetic process
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061274 lss lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) protein_coding Danio_rerio
ENSG00000160285 LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) protein_coding Homo_sapiens

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