C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat domain 28
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033209 Ttc28 10090 + 5:110879803-111289780 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040111 Ttc28-201 110879803-111289779 protein_coding
  ENSMUST00000125470 Ttc28-003 111225458-111229415 retained_intron
  ENSMUST00000128584 Ttc28-004 111233388-111238464 processed_transcript
  ENSMUST00000129017 Ttc28-005 111235315-111266599 retained_intron
  ENSMUST00000143505 Ttc28-002 110879822-110914316 processed_transcript
  ENSMUST00000156290 Ttc28-001 110879803-111289780 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000125470ENSMUST00000156290
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000125470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.022±0.00 N/A
ENSMUST00000156290 3.456±2.15 5.318±1.52 0.465±0.00 8.659±6.16 2.460±2.10 1.342±0.50 1.020±0.26 1.696±0.58 0.170±0.08 0.784±0.00 1.701±0.51 4.014±2.59 0.498±0.37 1.586±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NO CIL_0008NO_0002 VISTA 5:110598210-111198771
CIL_0007W4 CIL_0007W4_0002 VISTA 5:110754482-111355796
CIL_0004YV CIL_0004YV_0002 CGP 5:110879803-111388359

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0005813 ISO centrosome
GO:0007067 IEA mitotic nuclear division
GO:0007346 ISO regulation of mitotic cell cycle
GO:0030496 ISO midbody
GO:0072686 ISO mitotic spindle
GO:0097431 ISO mitotic spindle pole
GO:1990023 ISO mitotic spindle midzone

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087109 TTC28 (1 of 2) tetratricopeptide repeat domain 28 protein_coding Danio_rerio
ENSDARG00000089527 FP236598.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000100154 TTC28 tetratricopeptide repeat domain 28 protein_coding Homo_sapiens

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