C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat domain 28
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100154 TTC28 9606 - 22:27978014-28679865 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000397906 TTC28-001 27978014-28679865 protein_coding
  ENST00000431039 TTC28-005 27983599-27996239 protein_coding
  ENST00000442232 TTC28-003 28028815-28094135 protein_coding
  ENST00000468807 TTC28-002 28629428-28679812 retained_intron
  ENST00000469670 TTC28-004 27992612-27996424 retained_intron
  ENST00000480563 TTC28-006 27983752-27990076 retained_intron
  ENST00000490475 TTC28-007 28296214-28443073 processed_transcript
  ENST00000612946 TTC28-201 27978014-28306645 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397906ENST00000612946
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397906 N/A N/A N/A N/A N/A 1.196±0.00 N/A N/A 2.144±0.00 1.053±0.00 N/A N/A 2.071±0.00
ENST00000612946 4.515±0.00 2.833±0.00 3.093±0.00 2.244±0.92 2.715±0.00 2.707±0.00 1.546±0.04 2.388±0.00 1.776±0.00 N/A 4.779±2.26 3.909±0.00 4.142±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009D3 CIL_0009D3_0001 VISTA 22:27542325-28143730
CIL_0008Y6 CIL_0008Y6_0001 VISTA 22:27751293-28353466

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0007067 IEA mitotic nuclear division
GO:0007346 IEA regulation of mitotic cell cycle
GO:0030496 IEA midbody

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087109 TTC28 (1 of 2) tetratricopeptide repeat domain 28 protein_coding Danio_rerio
ENSDARG00000089527 FP236598.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000033209 Ttc28 tetratricopeptide repeat domain 28 protein_coding Mus_musculus

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