C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetratricopeptide repeat domain 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156290 Ttc28-001 ENSMUSG00000033209 10090 + 5:110879803-111289780 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000156290
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000156290 3.456±2.15 5.318±1.52 0.465±0.00 8.659±6.16 2.460±2.10 1.342±0.50 1.020±0.26 1.696±0.58 0.170±0.08 0.784±0.00 1.701±0.51 4.014±2.59 0.498±0.37 1.586±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NO CIL_0008NO_0002 VISTA 5:110598210-111198771
CIL_0007W4 CIL_0007W4_0002 VISTA 5:110754482-111355796
CIL_0004YV CIL_0004YV_0002 CGP 5:110879803-111388359

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0005813 ISO centrosome
GO:0007067 IEA mitotic nuclear division
GO:0007346 ISO regulation of mitotic cell cycle
GO:0030496 ISO midbody
GO:0072686 ISO mitotic spindle
GO:0097431 ISO mitotic spindle pole
GO:1990023 ISO mitotic spindle midzone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000397906 TTC28-001 protein_coding Homo_sapiens 0 7293
ENST00000442232 TTC28-003 protein_coding Homo_sapiens 0 226
ENST00000468807 TTC28-002 retained_intron Homo_sapiens 0 464
ENST00000490475 TTC28-007 processed_transcript Homo_sapiens 0 780
ENST00000568567 RP11-17M15.2-001 processed_transcript Homo_sapiens 4e-26 124
ENST00000612946 TTC28-201 protein_coding Homo_sapiens 0 6813

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