C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 2 (ARID, RFX-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033237 Arid2 10090 + 15:96287518-96404992 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000096250 Arid2-001 96287573-96404992 protein_coding
  ENSMUST00000134985 Arid2-002 96287518-96352038 protein_coding
  ENSMUST00000175735 Arid2-004 96356840-96359783 retained_intron
  ENSMUST00000176739 Arid2-003 96372761-96403601 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000096250
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000096250 9.536±3.82 13.218±1.64 6.421±0.42 8.672±4.77 8.989±3.87 8.669±2.01 2.737±0.96 4.795±2.08 4.597±2.96 9.287±2.36 2.019±0.25 19.109±8.13 5.919±1.80 30.084±16.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006R9 CIL_0006R9_0002 CGP 15:96287518-96460843

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 ISA transcription factor complex
GO:0006337 IEA nucleosome disassembly
GO:0008134 ISA transcription factor binding
GO:0045944 ISA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007413 arid2 AT rich interactive domain 2 (ARID, RFX-like) protein_coding Danio_rerio
ENSG00000189079 ARID2 AT rich interactive domain 2 (ARID, RFX-like) protein_coding Homo_sapiens

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