C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 2 (ARID, RFX-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000189079 ARID2 9606 + 12:45729665-45908040 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000334344 ARID2-001 45729665-45908040 protein_coding
  ENST00000422737 ARID2-002 45729916-45893918 protein_coding
  ENST00000426776 ARID2-008 45729886-45776329 processed_transcript
  ENST00000427628 ARID2-007 45729873-45756005 processed_transcript
  ENST00000444670 ARID2-003 45837395-45908040 protein_coding
  ENST00000457135 ARID2-006 45852295-45908040 protein_coding
  ENST00000477947 ARID2-009 45892043-45893888 protein_coding
  ENST00000479608 ARID2-004 45836761-45908040 processed_transcript
  ENST00000480128 ARID2-005 45836945-45842234 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334344ENST00000422737ENST00000444670ENST00000457135ENST00000480128
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334344 1.686±0.00 0.463±0.00 2.665±0.00 0.638±0.37 2.015±1.35 2.233±1.19 1.158±0.00 0.734±0.38 1.911±1.72 2.839±1.70 0.736±0.24 1.875±1.27 0.739±0.08 2.306±0.00
ENST00000422737 0.634±0.00 0.704±0.00 N/A 0.690±0.36 0.828±0.00 N/A 0.790±0.08 0.893±0.00 2.043±0.00 N/A 0.495±0.00 1.193±0.74 0.537±0.00 2.555±0.00
ENST00000444670 0.569±0.00 0.393±0.00 N/A 0.312±0.02 N/A 0.700±0.35 N/A 0.651±0.00 0.321±0.00 0.890±0.46 0.237±0.00 1.172±0.52 0.768±0.49 4.092±2.31
ENST00000457135 N/A 0.933±0.00 N/A N/A 0.973±0.00 0.781±0.00 N/A 1.021±0.00 0.394±0.00 0.943±0.00 N/A 0.932±0.45 0.539±0.00 3.105±0.04
ENST00000480128 N/A N/A 3.225±0.00 N/A 4.398±0.00 N/A N/A 1.809±0.00 3.447±0.00 N/A 1.036±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006R9 CIL_0006R9_0001 CGP 12:45729665-45992120

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006337 IDA nucleosome disassembly
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007413 arid2 AT rich interactive domain 2 (ARID, RFX-like) protein_coding Danio_rerio
ENSMUSG00000033237 Arid2 AT rich interactive domain 2 (ARID, RFX-like) protein_coding Mus_musculus

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