C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 2 (ARID, RFX-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000096250 Arid2-001 ENSMUSG00000033237 10090 + 15:96287573-96404992 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000096250
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000096250 9.536±3.82 13.218±1.64 6.421±0.42 8.672±4.77 8.989±3.87 8.669±2.01 2.737±0.96 4.795±2.08 4.597±2.96 9.287±2.36 2.019±0.25 19.109±8.13 5.919±1.80 30.084±16.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006R9 CIL_0006R9_0002 CGP 15:96287518-96460843

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 ISA transcription factor complex
GO:0006337 IEA nucleosome disassembly
GO:0008134 ISA transcription factor binding
GO:0045944 ISA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000019144 arid2-001 protein_coding Danio_rerio 2e-28 134
ENST00000334344 ARID2-001 protein_coding Homo_sapiens 0 8780
ENST00000422737 ARID2-002 protein_coding Homo_sapiens 0 6312
ENST00000426776 ARID2-008 processed_transcript Homo_sapiens 0 403
ENST00000427628 ARID2-007 processed_transcript Homo_sapiens 0 420
ENST00000444670 ARID2-003 protein_coding Homo_sapiens 0 6748
ENST00000457135 ARID2-006 protein_coding Homo_sapiens 0 2206
ENST00000477947 ARID2-009 protein_coding Homo_sapiens 9e-36 154
ENST00000479608 ARID2-004 processed_transcript Homo_sapiens 0 6661

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