C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin tyrosine ligase-like family, member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033257 Ttll4 10090 + 1:74661745-74703730 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042125 Ttll4-001 74661745-74703730 protein_coding
  ENSMUST00000113678 Ttll4-008 74678898-74697977 protein_coding
  ENSMUST00000128891 Ttll4-002 74695213-74699878 retained_intron
  ENSMUST00000129890 Ttll4-004 74661817-74681791 protein_coding
  ENSMUST00000140591 Ttll4-007 74685956-74688650 processed_transcript
  ENSMUST00000141119 Ttll4-003 74661750-74685357 protein_coding
  ENSMUST00000143790 Ttll4-011 74695734-74697841 processed_transcript
  ENSMUST00000143925 Ttll4-006 74685326-74688628 processed_transcript
  ENSMUST00000145132 Ttll4-010 74690073-74701832 processed_transcript
  ENSMUST00000153636 Ttll4-005 74661817-74673255 retained_intron
  ENSMUST00000155753 Ttll4-009 74689423-74690678 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042125ENSMUST00000113678ENSMUST00000128891ENSMUST00000129890ENSMUST00000141119ENSMUST00000145132
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042125 1.610±0.85 1.103±0.41 1.333±0.33 1.771±0.52 1.244±0.47 1.097±0.41 0.545±0.21 1.089±0.44 1.216±0.51 1.928±0.67 0.547±0.11 3.539±1.31 0.921±0.34 6.494±0.68
ENSMUST00000113678 2.063±0.90 1.865±0.85 1.719±0.17 2.333±0.97 2.597±1.94 1.579±0.37 0.667±0.08 1.633±0.47 1.430±0.71 1.493±0.20 1.922±0.42 3.571±1.33 2.961±1.91 16.074±6.14
ENSMUST00000128891 N/A 2.411±0.67 N/A N/A 2.102±0.30 1.536±0.19 N/A N/A N/A 2.502±0.00 N/A 4.643±1.08 N/A N/A
ENSMUST00000129890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.988±0.00
ENSMUST00000141119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.178±0.00
ENSMUST00000145132 2.342±0.88 1.305±0.13 4.678±1.04 6.572±3.56 3.170±1.21 1.536±0.57 1.674±0.18 2.484±0.25 2.740±1.51 2.791±0.56 2.734±0.46 4.399±1.84 2.382±0.89 5.040±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000652 CIL_000652_0002 CGP 1:74601445-74703730
CIL_000653 CIL_000653_0002 CGP 1:74661745-74737892

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005929 IEA cilium
GO:0015631 IDA tubulin binding
GO:0016874 IEA ligase activity
GO:0018095 IDA protein polyglutamylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078935 ttll4 tubulin tyrosine ligase-like family, member 4 protein_coding Danio_rerio
ENSG00000135912 TTLL4 tubulin tyrosine ligase-like family, member 4 protein_coding Homo_sapiens

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