C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin tyrosine ligase-like family, member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042125 Ttll4-001 ENSMUSG00000033257 10090 + 1:74661745-74703730 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042125
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042125 1.610±0.85 1.103±0.41 1.333±0.33 1.771±0.52 1.244±0.47 1.097±0.41 0.545±0.21 1.089±0.44 1.216±0.51 1.928±0.67 0.547±0.11 3.539±1.31 0.921±0.34 6.494±0.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000652 CIL_000652_0002 CGP 1:74601445-74703730
CIL_000653 CIL_000653_0002 CGP 1:74661745-74737892

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005929 IEA cilium
GO:0015631 IDA tubulin binding
GO:0016874 IEA ligase activity
GO:0018095 IDA protein polyglutamylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258398 TTLL4-201 protein_coding Homo_sapiens 0 3760
ENST00000392102 TTLL4-001 protein_coding Homo_sapiens 0 3760
ENST00000415717 TTLL4-006 protein_coding Homo_sapiens 0 449
ENST00000417196 TTLL4-018 nonsense_mediated_decay Homo_sapiens 0 691
ENST00000417855 TTLL4-016 protein_coding Homo_sapiens 0 431
ENST00000424644 TTLL4-008 protein_coding Homo_sapiens 0 449
ENST00000434241 TTLL4-019 nonsense_mediated_decay Homo_sapiens 0 398
ENST00000436668 TTLL4-015 protein_coding Homo_sapiens 0 556
ENST00000437755 TTLL4-007 protein_coding Homo_sapiens 0 654
ENST00000442769 TTLL4-003 protein_coding Homo_sapiens 0 1903
ENST00000448224 TTLL4-020 protein_coding Homo_sapiens 0 520
ENST00000457313 TTLL4-002 protein_coding Homo_sapiens 0 3164
ENST00000461181 TTLL4-009 retained_intron Homo_sapiens 0 279
ENST00000465558 TTLL4-005 retained_intron Homo_sapiens 0 1563
ENST00000467841 TTLL4-011 retained_intron Homo_sapiens 0 1070
ENST00000475950 TTLL4-013 retained_intron Homo_sapiens 0 527
ENST00000480472 TTLL4-012 retained_intron Homo_sapiens 0 828
ENST00000480929 TTLL4-004 retained_intron Homo_sapiens 3e-31 141
ENST00000491899 TTLL4-014 retained_intron Homo_sapiens 0 490
ENST00000494428 TTLL4-010 retained_intron Homo_sapiens 0 970

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