C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rpgrip1-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033282 Rpgrip1l 10090 - 8:91217030-91313262 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047783 Rpgrip1l-001 91217030-91313262 protein_coding
  ENSMUST00000132757 Rpgrip1l-003 91308036-91311080 protein_coding
  ENSMUST00000136198 Rpgrip1l-004 91269632-91276762 retained_intron
  ENSMUST00000139113 Rpgrip1l-002 91218956-91313222 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047783ENSMUST00000136198ENSMUST00000139113
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047783 0.706±0.19 0.426±0.12 1.103±0.12 1.859±0.98 0.492±0.13 0.292±0.09 0.203±0.01 0.627±0.21 0.421±0.24 0.800±0.11 0.207±0.01 1.755±1.06 1.041±0.10 3.009±0.24
ENSMUST00000136198 N/A 0.126±0.02 N/A N/A 0.351±0.00 N/A N/A N/A N/A N/A N/A 0.340±0.00 N/A N/A
ENSMUST00000139113 N/A N/A N/A 1.479±0.00 N/A 0.362±0.00 N/A N/A N/A N/A N/A 0.945±0.67 0.579±0.32 2.001±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_0007PV CIL_0007PV_0002 VISTA 8:90870647-91472060
CIL_0008IZ CIL_0008IZ_0002 VISTA 8:90885299-91486231
CIL_0007S1 CIL_0007S1_0002 VISTA 8:91005057-91606285
CIL_0007S0 CIL_0007S0_0002 VISTA 8:91042027-91642872
CIL_0005OC CIL_0005OC_0002 CGP 8:91112041-91313262
CIL_0007SA CIL_0007SA_0002 VISTA 8:91191445-91792009
CIL_0007X2 CIL_0007X2_0002 VISTA 8:91208767-91810326
CIL_0005OE CIL_0005OE_0002 CGP 8:91217030-91668439

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001736 IMP establishment of planar polarity
GO:0001822 IMP kidney development
GO:0001889 IMP liver development
GO:0005515 IPI protein binding
GO:0005737 ISA cytoplasm
GO:0005813 ISA centrosome
GO:0005911 ISS cell-cell junction
GO:0005923 IEA tight junction
GO:0005929 ISA cilium
GO:0005930 ISA axoneme
GO:0007163 IMP establishment or maintenance of cell polarity
GO:0007368 IMP determination of left/right symmetry
GO:0007420 IMP brain development
GO:0008589 IMP regulation of smoothened signaling pathway
GO:0021532 IMP neural tube patterning
GO:0021537 IMP telencephalon development
GO:0021549 IMP cerebellum development
GO:0021670 IMP lateral ventricle development
GO:0021772 IMP olfactory bulb development
GO:0022038 IMP corpus callosum development
GO:0031870 IEA thromboxane A2 receptor binding
GO:0035108 IMP limb morphogenesis
GO:0035115 IMP embryonic forelimb morphogenesis
GO:0035116 IMP embryonic hindlimb morphogenesis
GO:0035869 IDA ciliary transition zone
GO:0036064 IDA ciliary basal body
GO:0042384 IMP cilium assembly
GO:0043010 IMP camera-type eye development
GO:0043584 IMP nose development
GO:0045744 ISS negative regulation of G-protein coupled receptor protein signaling pathway
GO:0060039 IMP pericardium development
GO:0060271 IMP cilium morphogenesis
GO:0060322 IMP head development
GO:0090102 IMP cochlea development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051754 rpgrip1l RPGRIP1-like protein_coding Danio_rerio
ENSG00000103494 RPGRIP1L RPGRIP1-like protein_coding Homo_sapiens

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