C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007SA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs57 VISTA 9606 16:53595301-54195912
GeneTranscriptPositionBiotype
ENSG00000103494 (RPGRIP1L)
RPGRIP1-like 		ENST00000262135 (RPGRIP1L-003) 53597683-53703889 protein_coding
ENST00000379925 (RPGRIP1L-009) 53600778-53703846 protein_coding
ENST00000562230 (RPGRIP1L-005) 53671551-53703844 protein_coding
ENST00000562588 (RPGRIP1L-008) 53692227-53703830 protein_coding
ENST00000563746 (RPGRIP1L-007) 53601781-53703847 protein_coding
ENST00000564374 (RPGRIP1L-001) 53605395-53703889 protein_coding
ENST00000565343 (RPGRIP1L-012) 53653451-53659893 retained_intron
ENST00000566096 (RPGRIP1L-010) 53695631-53703938 protein_coding
ENST00000568009 (RPGRIP1L-013) 53635441-53638374 processed_transcript
ENST00000568653 (RPGRIP1L-002) 53693312-53703847 protein_coding
ENST00000569716 (RPGRIP1L-006) 53696213-53703810 protein_coding
ENST00000621565 (RPGRIP1L-201) 53599912-53703859 protein_coding
ENSG00000140718 (FTO)
fat mass and obesity associated 		ENST00000268349 (FTO-008) 53934030-54114463 protein_coding
ENST00000431610 (FTO-006) 53886917-54112138 protein_coding
ENST00000460382 (FTO-002) 53886930-54112987 protein_coding
ENST00000463855 (FTO-005) 53911256-54114463 protein_coding
ENST00000464071 (FTO-003) 53704182-54112087 nonsense_mediated_decay
ENST00000471389 (FTO-001) 53703963-54121941 protein_coding
ENST00000472835 (FTO-007) 54063637-54112302 processed_transcript
ENST00000570395 (FTO-009) 53704156-53825968 processed_transcript
ENSG00000260194 (RP11-357N13.2)
 ENST00000565641 (RP11-357N13.2-001) 53998313-53999969 antisense
ENSG00000260936 (FTO-IT1)
FTO intronic transcript 1 (non-protein coding) 		ENST00000563011 (FTO-IT1-001) 54039393-54040726 sense_intronic
ENSG00000261049 (RP11-357N13.1)
 ENST00000563879 (RP11-357N13.1-001) 54033997-54054583 antisense
ENSG00000261630 (RP11-357N13.3)
 ENST00000564801 (RP11-357N13.3-001) 53981229-53981912 antisense
ENSG00000275147 (RP11-324D17.3)
 ENST00000612285 (RP11-324D17.3-001) 54152855-54153448 lincRNA
ENSG00000275191 (RP11-36I17.2)
 ENST00000610421 (RP11-36I17.2-001) 53628256-53628816 sense_intronic
ENSG00000280392 (RP11-357N13.6)
 ENST00000624987 (RP11-357N13.6-001) 53991012-53994454 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0007SA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs57 VISTA 10090 8:91191445-91792009
GeneTranscriptPositionBiotype
ENSMUSG00000033282 (Rpgrip1l)
Rpgrip1-like 		ENSMUST00000047783 (Rpgrip1l-001) 91217030-91313262 protein_coding
ENSMUST00000132757 (Rpgrip1l-003) 91308036-91311080 protein_coding
ENSMUST00000136198 (Rpgrip1l-004) 91269632-91276762 retained_intron
ENSMUST00000139113 (Rpgrip1l-002) 91218956-91313222 nonsense_mediated_decay
ENSMUSG00000055932 (Fto)
fat mass and obesity associated 		ENSMUST00000069718 (Fto-001) 91313532-91668439 protein_coding
ENSMUST00000125471 (Fto-002) 91313535-91444766 retained_intron
ENSMUST00000128081 (Fto-005) 91313558-91526230 retained_intron
ENSMUST00000136802 (Fto-004) 91313568-91487791 retained_intron
ENSMUST00000140276 (Fto-003) 91467685-91666946 processed_transcript
ENSMUST00000149913 (Fto-006) 91390555-91409464 protein_coding
ENSMUST00000166548 (Fto-007) 91387736-91409840 protein_coding
ENSMUSG00000090778 (Gm3235)
predicted gene 3235 		ENSMUST00000168442 (Gm3235-001) 91621448-91629729 antisense

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007SA_0001ENSG00000103494ENST00000262135ENST00000379925ENST00000562230ENST00000562588ENST00000563746ENST00000564374ENST00000565343ENST00000566096ENST00000568009ENST00000568653ENST00000569716ENST00000621565ENSG00000140718ENST00000268349ENST00000431610ENST00000460382ENST00000463855ENST00000464071ENST00000471389ENST00000472835ENST00000570395ENSG00000260194ENST00000565641ENSG00000260936ENST00000563011ENSG00000261049ENST00000563879ENSG00000261630ENST00000564801ENSG00000275147ENST00000612285ENSG00000275191ENST00000610421ENSG00000280392ENST00000624987CIL_0007SA_0002ENSMUSG00000033282ENSMUST00000047783ENSMUST00000132757ENSMUST00000136198ENSMUST00000139113ENSMUSG00000055932ENSMUST00000069718ENSMUST00000125471ENSMUST00000128081ENSMUST00000136802ENSMUST00000140276ENSMUST00000149913ENSMUST00000166548ENSMUSG00000090778ENSMUST00000168442
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007SA_0001ENSG00000103494ENST00000262135ENST00000379925ENST00000562230ENST00000562588ENST00000563746ENST00000564374ENST00000565343ENST00000566096ENST00000568009ENST00000568653ENST00000621565ENSG00000140718ENST00000268349ENST00000463855ENST00000464071ENST00000471389ENSG00000260194ENST00000565641ENSG00000260936ENST00000563011ENSG00000261049ENST00000563879ENSG00000261630ENST00000564801ENSG00000275147ENST00000612285ENSG00000275191ENST00000610421ENSG00000280392ENST00000624987CIL_0007SA_0002ENSMUSG00000033282ENSMUST00000047783ENSMUST00000136198ENSMUST00000139113ENSMUSG00000055932ENSMUST00000069718ENSMUST00000140276ENSMUSG00000090778ENSMUST00000168442
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000103494 ENST00000262135 N/A N/A N/A 0.412±0.03 0.067±0.00 0.041±0.00 0.030±0.00 N/A 0.071±0.00 N/A N/A 0.192±0.07 0.100±0.00 N/A
ENST00000379925 0.046±0.00 N/A N/A N/A N/A N/A N/A 0.498±0.00 0.070±0.06 N/A N/A 0.282±0.00 N/A 1.827±0.00
ENST00000562230 N/A N/A N/A 1.163±0.00 N/A 0.586±0.00 N/A N/A 1.100±0.00 N/A N/A 0.789±0.00 N/A N/A
ENST00000562588 N/A N/A N/A N/A N/A N/A 0.529±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000563746 0.176±0.00 N/A N/A 0.346±0.00 0.182±0.00 0.164±0.06 N/A N/A 0.153±0.13 0.596±0.17 0.165±0.00 0.475±0.23 0.135±0.05 2.321±0.17
ENST00000564374 0.111±0.00 N/A N/A N/A N/A N/A 0.138±0.00 0.052±0.00 0.028±0.00 N/A N/A N/A 0.111±0.00 6.270±0.00
ENST00000565343 N/A N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A N/A
ENST00000566096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.333±0.00 N/A
ENST00000568009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.798±0.00 0.972±0.00 16.829±0.00
ENST00000568653 N/A 0.345±0.00 N/A 0.597±0.00 0.354±0.00 0.184±0.00 0.092±0.00 N/A 0.098±0.00 0.311±0.00 0.103±0.00 0.434±0.00 0.219±0.06 N/A
ENST00000569716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621565 0.057±0.00 0.099±0.00 0.242±0.00 0.734±0.00 0.313±0.11 0.258±0.00 0.088±0.00 0.026±0.00 0.092±0.00 0.279±0.00 0.062±0.00 0.315±0.13 0.099±0.02 0.927±0.00
ENSG00000140718 ENST00000268349 10.916±0.00 8.191±0.00 2.551±0.00 19.439±6.21 13.679±0.00 5.623±3.28 3.083±1.32 5.724±3.36 5.173±0.12 6.958±3.70 6.344±5.31 5.343±2.72 7.145±0.36 5.652±3.18
ENST00000431610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.018±0.00 N/A N/A
ENST00000464071 12.597±0.00 8.627±0.00 6.088±0.00 30.425±1.46 12.123±0.81 6.073±0.49 7.658±0.00 8.735±0.75 7.220±4.49 11.379±1.73 9.242±2.03 10.956±8.32 6.068±1.47 6.240±2.53
ENST00000471389 0.807±0.00 0.595±0.00 1.041±0.00 2.199±0.34 1.204±0.33 0.568±0.00 0.905±0.00 0.727±0.04 0.403±0.18 1.473±0.59 0.720±0.04 1.086±0.54 0.676±0.27 0.625±0.00
ENST00000472835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260194 ENST00000565641 N/A 0.016±0.00 N/A 0.079±0.00 0.456±0.43 0.100±0.00 0.043±0.00 N/A 0.327±0.00 N/A N/A 0.119±0.12 N/A 0.025±0.01
ENSG00000260936 ENST00000563011 0.313±0.00 0.694±0.00 0.899±0.00 0.171±0.00 1.182±0.90 0.448±0.40 0.134±0.07 N/A 0.312±0.27 1.752±0.15 0.065±0.00 0.192±0.14 0.142±0.04 0.210±0.00
ENSG00000261049 ENST00000563879 N/A N/A N/A 0.255±0.00 0.581±0.00 0.455±0.00 N/A N/A N/A 0.229±0.00 0.213±0.00 0.113±0.00 N/A 0.419±0.04
ENSG00000261630 ENST00000564801 0.972±0.00 1.469±0.00 1.118±0.00 1.187±0.22 0.658±0.51 0.244±0.02 0.416±0.12 1.768±0.00 0.374±0.00 1.371±0.10 0.634±0.00 0.369±0.11 N/A 0.467±0.20
ENSG00000275147 ENST00000612285 N/A 0.076±0.00 N/A N/A 0.552±0.00 N/A N/A 0.051±0.00 N/A N/A 0.023±0.00 N/A N/A 0.070±0.00
ENSG00000275191 ENST00000610421 N/A N/A N/A N/A 0.102±0.00 N/A N/A 0.199±0.00 N/A 0.075±0.00 N/A 0.205±0.07 0.085±0.00 0.224±0.00
ENSG00000280392 ENST00000624987 0.006±0.00 0.012±0.00 0.766±0.00 0.157±0.10 0.414±0.36 0.199±0.19 0.115±0.08 0.056±0.03 1.588±0.00 0.892±0.00 0.096±0.00 0.256±0.37 N/A 0.034±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000033282 ENSMUST00000047783 0.706±0.19 0.426±0.12 1.103±0.12 1.859±0.98 0.492±0.13 0.292±0.09 0.203±0.01 0.627±0.21 0.421±0.24 0.800±0.11 0.207±0.01 1.755±1.06 1.041±0.10 3.009±0.24
ENSMUST00000132757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136198 N/A 0.126±0.02 N/A N/A 0.351±0.00 N/A N/A N/A N/A N/A N/A 0.340±0.00 N/A N/A
ENSMUST00000139113 N/A N/A N/A 1.479±0.00 N/A 0.362±0.00 N/A N/A N/A N/A N/A 0.945±0.67 0.579±0.32 2.001±0.34
ENSMUSG00000055932 ENSMUST00000069718 24.486±2.38 16.514±2.48 27.982±0.38 41.561±19.29 21.056±4.40 12.488±0.62 18.887±1.37 21.556±0.61 9.817±0.83 19.840±1.36 26.728±1.18 26.244±5.39 12.559±5.42 19.767±8.24
ENSMUST00000125471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140276 N/A N/A N/A 74.177±0.00 N/A N/A N/A N/A N/A N/A N/A 46.370±0.00 19.704±0.38 25.350±13.65
ENSMUST00000149913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090778 ENSMUST00000168442 0.479±0.26 0.129±0.00 N/A 1.009±0.72 0.790±0.37 0.228±0.11 1.585±0.27 0.340±0.20 0.195±0.15 0.235±0.14 1.484±0.49 0.579±0.22 0.645±0.32 0.295±0.00

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