C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding protein, fox-1 homolog (C. elegans) 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033565 Rbfox2 10090 - 15:77078990-77307053 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048145 Rbfox2-201 77078990-77307053 protein_coding
  ENSMUST00000111581 Rbfox2-202 77078991-77153812 protein_coding
  ENSMUST00000166610 Rbfox2-203 77078991-77153812 protein_coding
  ENSMUST00000171751 Rbfox2-204 77078991-77307053 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048145ENSMUST00000111581ENSMUST00000166610ENSMUST00000171751
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048145 5.897±0.00 N/A 5.044±0.71 15.049±7.92 4.067±1.07 3.133±0.13 2.772±0.00 0.962±0.02 1.864±0.65 4.370±0.30 2.031±0.44 6.853±2.14 3.799±1.51 0.560±0.00
ENSMUST00000111581 3.721±1.16 N/A 5.234±0.06 N/A 4.812±0.02 N/A 4.555±1.45 N/A 1.159±0.40 3.698±0.00 2.932±1.43 N/A 0.735±0.00 0.631±0.00
ENSMUST00000166610 9.542±3.82 17.958±2.50 9.649±1.93 72.631±0.89 8.526±2.11 7.130±2.82 N/A 2.299±0.67 4.306±0.97 4.088±0.85 1.659±0.00 20.831±9.83 3.864±2.12 0.635±0.00
ENSMUST00000171751 9.977±4.60 5.903±1.21 5.502±0.00 N/A 4.440±1.15 6.404±0.60 3.115±0.00 2.993±1.29 1.619±0.83 10.668±1.00 1.416±0.00 8.263±3.29 2.322±0.49 1.515±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099W CIL_00099W_0002 VISTA 15:76709335-77309403
CIL_00094Q CIL_00094Q_0002 VISTA 15:76736640-77338764
CIL_0008TT CIL_0008TT_0002 VISTA 15:76789079-77390092
CIL_0001VM CIL_0001VM_0002 CGP 15:77078990-77399110

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IMP regulation of alternative mRNA splicing, via spliceosome
GO:0003714 ISS transcription corepressor activity
GO:0003723 ISS RNA binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008134 ISS transcription factor binding
GO:0008380 IEA RNA splicing
GO:0010724 IDA regulation of definitive erythrocyte differentiation
GO:0021942 IMP radial glia guided migration of Purkinje cell
GO:0030520 ISS intracellular estrogen receptor signaling pathway
GO:0044822 IEA poly(A) RNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0048813 IMP dendrite morphogenesis
GO:0050885 IGI neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052182 rbfox2 RNA binding protein, fox-1 homolog (C. elegans) 2 protein_coding Danio_rerio
ENSG00000100320 RBFOX2 RNA binding protein, fox-1 homolog (C. elegans) 2 protein_coding Homo_sapiens

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