C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding protein, fox-1 homolog (C. elegans) 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111581 Rbfox2-202 ENSMUSG00000033565 10090 - 15:77078991-77153812 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartLiverLungMusclePlacentaTestisENSMUST00000111581
Transcript ID Adipose Bladder Breast Heart Liver Lung Muscle Placenta Testis
ENSMUST00000111581 3.721±1.16 5.234±0.06 4.812±0.02 4.555±1.45 1.159±0.40 3.698±0.00 2.932±1.43 0.735±0.00 0.631±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099W CIL_00099W_0002 VISTA 15:76709335-77309403
CIL_00094Q CIL_00094Q_0002 VISTA 15:76736640-77338764
CIL_0008TT CIL_0008TT_0002 VISTA 15:76789079-77390092
CIL_0001VM CIL_0001VM_0002 CGP 15:77078990-77399110

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IMP regulation of alternative mRNA splicing, via spliceosome
GO:0003714 ISS transcription corepressor activity
GO:0003723 ISS RNA binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0006397 IEA mRNA processing
GO:0008134 ISS transcription factor binding
GO:0008380 IEA RNA splicing
GO:0010724 IDA regulation of definitive erythrocyte differentiation
GO:0021942 IMP radial glia guided migration of Purkinje cell
GO:0030520 ISS intracellular estrogen receptor signaling pathway
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0048813 IMP dendrite morphogenesis
GO:0050885 IGI neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262829 RBFOX2-002 protein_coding Homo_sapiens 0 1254
ENST00000311745 RBFOX1-001 protein_coding Homo_sapiens 0 311
ENST00000340209 RBFOX1-201 protein_coding Homo_sapiens 0 311
ENST00000355637 RBFOX1-002 protein_coding Homo_sapiens 0 311
ENST00000359369 RBFOX2-006 protein_coding Homo_sapiens 0 1236
ENST00000397303 RBFOX2-009 protein_coding Homo_sapiens 0 1840
ENST00000397305 RBFOX2-013 protein_coding Homo_sapiens 0 553
ENST00000405409 RBFOX2-001 protein_coding Homo_sapiens 0 1531
ENST00000408983 RBFOX2-012 protein_coding Homo_sapiens 0 739
ENST00000414461 RBFOX2-010 protein_coding Homo_sapiens 0 1225
ENST00000416721 RBFOX2-008 protein_coding Homo_sapiens 0 1725
ENST00000422070 RBFOX1-009 protein_coding Homo_sapiens 0 311
ENST00000436368 RBFOX1-011 protein_coding Homo_sapiens 0 311
ENST00000438146 RBFOX2-005 protein_coding Homo_sapiens 0 1515
ENST00000449924 RBFOX2-003 protein_coding Homo_sapiens 0 1908
ENST00000463509 RBFOX2-011 retained_intron Homo_sapiens 0 538
ENST00000473487 RBFOX2-014 protein_coding Homo_sapiens 0 1035
ENST00000491982 RBFOX2-007 retained_intron Homo_sapiens 0 704
ENST00000495377 RBFOX2-004 protein_coding Homo_sapiens 0 1158
ENST00000547338 RBFOX1-008 protein_coding Homo_sapiens 0 311
ENST00000547372 RBFOX1-010 protein_coding Homo_sapiens 0 311
ENST00000547605 RBFOX1-014 protein_coding Homo_sapiens 0 309
ENST00000550418 RBFOX1-003 protein_coding Homo_sapiens 0 311
ENST00000551752 RBFOX1-007 protein_coding Homo_sapiens 0 311
ENST00000552089 RBFOX1-006 protein_coding Homo_sapiens 0 196
ENST00000553186 RBFOX1-004 protein_coding Homo_sapiens 0 311
ENST00000570626 RBFOX1-019 protein_coding Homo_sapiens 0 248
ENST00000618140 RBFOX2-201 protein_coding Homo_sapiens 0 1456
ENST00000619768 RBFOX2-202 protein_coding Homo_sapiens 0 2047
ENST00000620507 RBFOX1-202 protein_coding Homo_sapiens 0 311

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