C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001VM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100320-ENSG00000128284 CGP 9606 22:35738736-36166177
GeneTranscriptPositionBiotype
ENSG00000128284 (APOL3)
apolipoprotein L, 3 		ENST00000349314 (APOL3-003) 36140330-36160929 protein_coding
ENST00000361710 (APOL3-001) 36140330-36166177 protein_coding
ENST00000397287 (APOL3-002) 36140330-36166177 protein_coding
ENST00000397289 (APOL3-006) 36140330-36160929 nonsense_mediated_decay
ENST00000397293 (APOL3-201) 36140330-36160929 protein_coding
ENST00000422426 (APOL3-005) 36140330-36160929 nonsense_mediated_decay
ENST00000424878 (APOL3-202) 36141027-36149126 protein_coding
ENST00000426939 (APOL3-019) 36141716-36160754 nonsense_mediated_decay
ENST00000432700 (APOL3-004) 36140330-36160929 nonsense_mediated_decay
ENST00000472303 (APOL3-010) 36149075-36160755 nonsense_mediated_decay
ENST00000485453 (APOL3-011) 36145544-36156938 processed_transcript
ENST00000487355 (APOL3-009) 36141528-36160755 nonsense_mediated_decay
ENST00000487423 (APOL3-012) 36141703-36156936 processed_transcript
ENST00000487783 (APOL3-008) 36145489-36160755 nonsense_mediated_decay
ENST00000525184 (APOL3-016) 36145507-36156885 processed_transcript
ENST00000528740 (APOL3-014) 36155720-36156886 processed_transcript
ENST00000530895 (APOL3-015) 36146259-36160755 nonsense_mediated_decay
ENST00000531095 (APOL3-007) 36154449-36160783 protein_coding
ENST00000531195 (APOL3-018) 36145483-36160754 nonsense_mediated_decay
ENST00000533061 (APOL3-013) 36159230-36160755 processed_transcript
ENST00000534251 (APOL3-017) 36141863-36156949 processed_transcript
ENSG00000237406 (NDUFA9P1)
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, pseudogene 1 		ENST00000436210 (NDUFA9P1-001) 35897270-35898404 processed_pseudogene
ENSG00000279217 (CTA-212A2.3)
 ENST00000624264 (CTA-212A2.3-001) 36071000-36085573 lincRNA
ENSG00000279652 (RP1-78B3.1)
 ENST00000625157 (RP1-78B3.1-001) 35992321-36000469 lincRNA
ENSG00000279714 (CTA-212A2.2)
 ENST00000623490 (CTA-212A2.2-001) 36091148-36093352 lincRNA
ENSG00000279805 (CTA-212A2.1)
 ENST00000624395 (CTA-212A2.1-001) 36137430-36139350 TEC
ENSG00000279927 (CTA-212A2.4)
 ENST00000623420 (CTA-212A2.4-001) 36066533-36070110 lincRNA
CIL_0001VM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033565-ENSMUSG00000010601 CGP 10090 15:77078990-77399110
GeneTranscriptPositionBiotype
ENSMUSG00000010601 (Apol7a)
apolipoprotein L 7a 		ENSMUST00000010745 (Apol7a-201) 77388957-77396458 protein_coding
ENSMUST00000175789 (Apol7a-003) 77393415-77398451 protein_coding
ENSMUST00000175919 (Apol7a-002) 77388222-77399086 protein_coding
ENSMUST00000176074 (Apol7a-001) 77388221-77399110 protein_coding
ENSMUST00000177135 (Apol7a-004) 77393333-77396934 retained_intron
ENSMUSG00000033565 (Rbfox2)
RNA binding protein, fox-1 homolog (C. elegans) 2 		ENSMUST00000048145 (Rbfox2-201) 77078990-77307053 protein_coding
ENSMUST00000111581 (Rbfox2-202) 77078991-77153812 protein_coding
ENSMUST00000166610 (Rbfox2-203) 77078991-77153812 protein_coding
ENSMUST00000171751 (Rbfox2-204) 77078991-77307053 protein_coding
ENSMUSG00000089242 (Gm24056)
predicted gene, 24056 		ENSMUST00000158617 (Gm24056-201) 77242406-77242551 snRNA
ENSMUSG00000093458 (Gm20688)
predicted gene 20688 		ENSMUST00000176779 (Gm20688-001) 77391702-77392381 processed_transcript
ENSMUSG00000097267 (1700109K24Rik)
RIKEN cDNA 1700109K24 gene 		ENSMUST00000181870 (1700109K24Rik-201) 77084443-77096314 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VM_0001ENSG00000128284ENST00000349314ENST00000361710ENST00000397287ENST00000397289ENST00000397293ENST00000422426ENST00000424878ENST00000426939ENST00000432700ENST00000472303ENST00000485453ENST00000487355ENST00000487423ENST00000487783ENST00000525184ENST00000528740ENST00000530895ENST00000531095ENST00000531195ENST00000533061ENST00000534251ENSG00000237406ENST00000436210ENSG00000279217ENST00000624264ENSG00000279652ENST00000625157ENSG00000279714ENST00000623490ENSG00000279805ENST00000624395ENSG00000279927ENST00000623420CIL_0001VM_0002ENSMUSG00000010601ENSMUST00000010745ENSMUST00000175789ENSMUST00000175919ENSMUST00000176074ENSMUST00000177135ENSMUSG00000033565ENSMUST00000048145ENSMUST00000111581ENSMUST00000166610ENSMUST00000171751ENSMUSG00000089242ENSMUST00000158617ENSMUSG00000093458ENSMUST00000176779ENSMUSG00000097267ENSMUST00000181870
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VM_0001ENSG00000128284ENST00000349314ENST00000361710ENST00000397293ENST00000422426ENST00000424878ENST00000426939ENST00000432700ENSG00000237406ENST00000436210ENSG00000279217ENST00000624264ENSG00000279652ENST00000625157ENSG00000279714ENST00000623490ENSG00000279805ENST00000624395ENSG00000279927ENST00000623420CIL_0001VM_0002ENSMUSG00000010601ENSMUST00000010745ENSMUST00000175919ENSMUST00000176074ENSMUST00000177135ENSMUSG00000033565ENSMUST00000048145ENSMUST00000111581ENSMUST00000166610ENSMUST00000171751ENSMUSG00000089242ENSMUST00000158617ENSMUSG00000093458ENSMUST00000176779ENSMUSG00000097267ENSMUST00000181870
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128284 ENST00000349314 39.178±0.00 24.863±0.00 N/A 1.280±0.00 17.489±0.00 7.451±6.98 N/A 8.910±0.00 1.051±0.00 N/A 5.994±0.00 3.803±0.86 7.998±0.70 8.404±0.00
ENST00000361710 N/A N/A N/A N/A N/A N/A N/A 0.471±0.00 N/A N/A N/A N/A N/A N/A
ENST00000397287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397293 18.671±0.00 N/A N/A N/A 1.611±0.00 N/A 4.062±3.24 8.328±0.00 0.914±0.00 N/A 0.521±0.00 7.145±2.65 12.861±3.28 0.499±0.00
ENST00000422426 N/A N/A N/A 0.273±0.18 N/A N/A N/A N/A 0.613±0.00 1.578±0.00 1.711±0.00 N/A N/A N/A
ENST00000424878 N/A N/A N/A 1.545±0.00 8.500±0.00 1.859±0.00 1.366±0.00 5.534±0.00 3.500±0.00 6.549±0.00 N/A 1.423±0.00 N/A N/A
ENST00000426939 N/A N/A N/A N/A N/A N/A N/A 3.407±0.00 N/A 8.875±0.00 N/A N/A N/A N/A
ENST00000432700 6.520±0.00 N/A N/A N/A N/A N/A 1.509±0.00 N/A N/A N/A N/A N/A N/A 2.253±0.00
ENST00000472303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000237406 ENST00000436210 0.047±0.00 0.061±0.00 1.044±0.00 0.136±0.06 0.262±0.23 0.071±0.05 0.216±0.15 1.175±1.12 0.447±0.38 0.432±0.41 0.281±0.27 0.339±0.30 0.102±0.00 0.157±0.12
ENSG00000279217 ENST00000624264 0.144±0.00 N/A N/A 0.113±0.11 0.229±0.00 0.026±0.00 0.065±0.06 N/A 0.003±0.00 0.080±0.07 N/A 0.032±0.02 0.033±0.01 0.150±0.05
ENSG00000279652 ENST00000625157 0.087±0.00 0.259±0.00 0.356±0.00 0.108±0.00 0.094±0.00 N/A 0.128±0.00 0.533±0.00 0.052±0.00 0.083±0.00 0.031±0.00 0.200±0.23 0.011±0.00 N/A
ENSG00000279714 ENST00000623490 0.191±0.00 N/A 0.040±0.00 0.063±0.00 0.129±0.10 0.130±0.00 0.104±0.02 0.053±0.00 0.057±0.02 0.163±0.00 0.077±0.00 0.090±0.08 0.058±0.00 0.156±0.04
ENSG00000279805 ENST00000624395 1.750±0.00 1.251±0.00 0.264±0.00 0.100±0.02 0.819±0.33 0.365±0.21 0.324±0.06 0.452±0.32 0.115±0.05 1.631±0.95 0.272±0.10 0.252±0.17 0.380±0.10 0.221±0.10
ENSG00000279927 ENST00000623420 0.147±0.00 0.393±0.00 N/A 0.146±0.00 0.153±0.00 0.140±0.00 0.107±0.00 0.136±0.00 0.062±0.00 0.150±0.00 0.067±0.00 0.044±0.01 0.071±0.06 0.127±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000010601 ENSMUST00000010745 N/A N/A N/A N/A N/A N/A 0.182±0.00 N/A 0.041±0.00 N/A 0.024±0.00 0.480±0.28 0.165±0.06 0.090±0.00
ENSMUST00000175789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175919 0.253±0.18 0.101±0.00 0.606±0.08 0.095±0.00 0.146±0.10 5.130±2.39 0.083±0.02 0.020±0.01 13.438±12.66 0.175±0.03 0.033±0.00 0.535±0.31 0.845±0.93 0.055±0.02
ENSMUST00000176074 N/A 0.128±0.00 N/A 0.041±0.00 0.130±0.07 0.562±0.21 N/A N/A 15.573±13.11 0.103±0.02 N/A 0.191±0.06 N/A N/A
ENSMUST00000177135 0.094±0.05 N/A N/A N/A 0.130±0.00 N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A 0.047±0.00
ENSMUSG00000033565 ENSMUST00000048145 5.897±0.00 N/A 5.044±0.71 15.049±7.92 4.067±1.07 3.133±0.13 2.772±0.00 0.962±0.02 1.864±0.65 4.370±0.30 2.031±0.44 6.853±2.14 3.799±1.51 0.560±0.00
ENSMUST00000111581 3.721±1.16 N/A 5.234±0.06 N/A 4.812±0.02 N/A 4.555±1.45 N/A 1.159±0.40 3.698±0.00 2.932±1.43 N/A 0.735±0.00 0.631±0.00
ENSMUST00000166610 9.542±3.82 17.958±2.50 9.649±1.93 72.631±0.89 8.526±2.11 7.130±2.82 N/A 2.299±0.67 4.306±0.97 4.088±0.85 1.659±0.00 20.831±9.83 3.864±2.12 0.635±0.00
ENSMUST00000171751 9.977±4.60 5.903±1.21 5.502±0.00 N/A 4.440±1.15 6.404±0.60 3.115±0.00 2.993±1.29 1.619±0.83 10.668±1.00 1.416±0.00 8.263±3.29 2.322±0.49 1.515±0.63
ENSMUSG00000089242 ENSMUST00000158617 N/A N/A N/A 2.424±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000093458 ENSMUST00000176779 0.105±0.01 0.165±0.00 0.086±0.00 N/A 2.177±0.79 0.665±0.41 N/A 0.082±0.00 0.307±0.29 0.103±0.00 0.424±0.00 0.105±0.00 0.117±0.03 0.153±0.09
ENSMUSG00000097267 ENSMUST00000181870 0.667±0.18 0.534±0.38 0.620±0.03 1.461±0.00 0.305±0.12 0.232±0.03 0.104±0.04 0.186±0.20 0.252±0.10 0.568±0.08 0.177±0.08 0.831±0.44 0.581±0.17 2.021±0.42

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