C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001VM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100320-ENSG00000128284 CGP 9606 22:35738736-36166177
GeneTranscriptPositionBiotype
ENSG00000128284 (APOL3)
apolipoprotein L, 3 		ENST00000349314 (APOL3-003) 36140330-36160929 protein_coding
ENST00000361710 (APOL3-001) 36140330-36166177 protein_coding
ENST00000397287 (APOL3-002) 36140330-36166177 protein_coding
ENST00000397289 (APOL3-006) 36140330-36160929 nonsense_mediated_decay
ENST00000397293 (APOL3-201) 36140330-36160929 protein_coding
ENST00000422426 (APOL3-005) 36140330-36160929 nonsense_mediated_decay
ENST00000424878 (APOL3-202) 36141027-36149126 protein_coding
ENST00000426939 (APOL3-019) 36141716-36160754 nonsense_mediated_decay
ENST00000432700 (APOL3-004) 36140330-36160929 nonsense_mediated_decay
ENST00000472303 (APOL3-010) 36149075-36160755 nonsense_mediated_decay
ENST00000485453 (APOL3-011) 36145544-36156938 processed_transcript
ENST00000487355 (APOL3-009) 36141528-36160755 nonsense_mediated_decay
ENST00000487423 (APOL3-012) 36141703-36156936 processed_transcript
ENST00000487783 (APOL3-008) 36145489-36160755 nonsense_mediated_decay
ENST00000525184 (APOL3-016) 36145507-36156885 processed_transcript
ENST00000528740 (APOL3-014) 36155720-36156886 processed_transcript
ENST00000530895 (APOL3-015) 36146259-36160755 nonsense_mediated_decay
ENST00000531095 (APOL3-007) 36154449-36160783 protein_coding
ENST00000531195 (APOL3-018) 36145483-36160754 nonsense_mediated_decay
ENST00000533061 (APOL3-013) 36159230-36160755 processed_transcript
ENST00000534251 (APOL3-017) 36141863-36156949 processed_transcript
ENSG00000237406 (NDUFA9P1)
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, pseudogene 1 		ENST00000436210 (NDUFA9P1-001) 35897270-35898404 processed_pseudogene
ENSG00000279217 (CTA-212A2.3)
 ENST00000624264 (CTA-212A2.3-001) 36071000-36085573 lincRNA
ENSG00000279652 (RP1-78B3.1)
 ENST00000625157 (RP1-78B3.1-001) 35992321-36000469 lincRNA
ENSG00000279714 (CTA-212A2.2)
 ENST00000623490 (CTA-212A2.2-001) 36091148-36093352 lincRNA
ENSG00000279805 (CTA-212A2.1)
 ENST00000624395 (CTA-212A2.1-001) 36137430-36139350 TEC
ENSG00000279927 (CTA-212A2.4)
 ENST00000623420 (CTA-212A2.4-001) 36066533-36070110 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0001VM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033565-ENSMUSG00000010601 CGP 10090 15:77078990-77399110
GeneTranscriptPositionBiotype
ENSMUSG00000010601 (Apol7a)
apolipoprotein L 7a 		ENSMUST00000010745 (Apol7a-201) 77388957-77396458 protein_coding
ENSMUST00000175789 (Apol7a-003) 77393415-77398451 protein_coding
ENSMUST00000175919 (Apol7a-002) 77388222-77399086 protein_coding
ENSMUST00000176074 (Apol7a-001) 77388221-77399110 protein_coding
ENSMUST00000177135 (Apol7a-004) 77393333-77396934 retained_intron
ENSMUSG00000033565 (Rbfox2)
RNA binding protein, fox-1 homolog (C. elegans) 2 		ENSMUST00000048145 (Rbfox2-201) 77078990-77307053 protein_coding
ENSMUST00000111581 (Rbfox2-202) 77078991-77153812 protein_coding
ENSMUST00000166610 (Rbfox2-203) 77078991-77153812 protein_coding
ENSMUST00000171751 (Rbfox2-204) 77078991-77307053 protein_coding
ENSMUSG00000089242 (Gm24056)
predicted gene, 24056 		ENSMUST00000158617 (Gm24056-201) 77242406-77242551 snRNA
ENSMUSG00000093458 (Gm20688)
predicted gene 20688 		ENSMUST00000176779 (Gm20688-001) 77391702-77392381 processed_transcript
ENSMUSG00000097267 (1700109K24Rik)
RIKEN cDNA 1700109K24 gene 		ENSMUST00000181870 (1700109K24Rik-201) 77084443-77096314 lincRNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VM_0001ENSG00000128284ENST00000349314ENST00000361710ENST00000397287ENST00000397289ENST00000397293ENST00000422426ENST00000424878ENST00000426939ENST00000432700ENST00000472303ENST00000485453ENST00000487355ENST00000487423ENST00000487783ENST00000525184ENST00000528740ENST00000530895ENST00000531095ENST00000531195ENST00000533061ENST00000534251ENSG00000237406ENST00000436210ENSG00000279217ENST00000624264ENSG00000279652ENST00000625157ENSG00000279714ENST00000623490ENSG00000279805ENST00000624395ENSG00000279927ENST00000623420CIL_0001VM_0002ENSMUSG00000010601ENSMUST00000010745ENSMUST00000175789ENSMUST00000175919ENSMUST00000176074ENSMUST00000177135ENSMUSG00000033565ENSMUST00000048145ENSMUST00000111581ENSMUST00000166610ENSMUST00000171751ENSMUSG00000089242ENSMUST00000158617ENSMUSG00000093458ENSMUST00000176779ENSMUSG00000097267ENSMUST00000181870
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001VM_0001ENSG00000128284ENST00000349314ENST00000361710ENST00000397293ENST00000422426ENST00000424878ENST00000426939ENST00000432700ENSG00000237406ENST00000436210ENSG00000279217ENST00000624264ENSG00000279652ENST00000625157ENSG00000279714ENST00000623490ENSG00000279805ENST00000624395ENSG00000279927ENST00000623420CIL_0001VM_0002ENSMUSG00000010601ENSMUST00000010745ENSMUST00000175919ENSMUST00000176074ENSMUST00000177135ENSMUSG00000033565ENSMUST00000048145ENSMUST00000111581ENSMUST00000166610ENSMUST00000171751ENSMUSG00000089242ENSMUST00000158617ENSMUSG00000093458ENSMUST00000176779ENSMUSG00000097267ENSMUST00000181870
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128284 ENST00000349314 39.178±0.00 24.863±0.00 N/A 1.280±0.00 17.489±0.00 7.451±6.98 N/A 8.910±0.00 1.051±0.00 N/A 5.994±0.00 3.803±0.86 7.998±0.70 8.404±0.00
ENST00000361710 N/A N/A N/A N/A N/A N/A N/A 0.471±0.00 N/A N/A N/A N/A N/A N/A
ENST00000397287 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397293 18.671±0.00 N/A N/A N/A 1.611±0.00 N/A 4.062±3.24 8.328±0.00 0.914±0.00 N/A 0.521±0.00 7.145±2.65 12.861±3.28 0.499±0.00
ENST00000422426 N/A N/A N/A 0.273±0.18 N/A N/A N/A N/A 0.613±0.00 1.578±0.00 1.711±0.00 N/A N/A N/A
ENST00000424878 N/A N/A N/A 1.545±0.00 8.500±0.00 1.859±0.00 1.366±0.00 5.534±0.00 3.500±0.00 6.549±0.00 N/A 1.423±0.00 N/A N/A
ENST00000426939 N/A N/A N/A N/A N/A N/A N/A 3.407±0.00 N/A 8.875±0.00 N/A N/A N/A N/A
ENST00000432700 6.520±0.00 N/A N/A N/A N/A N/A 1.509±0.00 N/A N/A N/A N/A N/A N/A 2.253±0.00
ENST00000472303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000237406 ENST00000436210 0.047±0.00 0.061±0.00 1.044±0.00 0.136±0.06 0.262±0.23 0.071±0.05 0.216±0.15 1.175±1.12 0.447±0.38 0.432±0.41 0.281±0.27 0.339±0.30 0.102±0.00 0.157±0.12
ENSG00000279217 ENST00000624264 0.144±0.00 N/A N/A 0.113±0.11 0.229±0.00 0.026±0.00 0.065±0.06 N/A 0.003±0.00 0.080±0.07 N/A 0.032±0.02 0.033±0.01 0.150±0.05
ENSG00000279652 ENST00000625157 0.087±0.00 0.259±0.00 0.356±0.00 0.108±0.00 0.094±0.00 N/A 0.128±0.00 0.533±0.00 0.052±0.00 0.083±0.00 0.031±0.00 0.200±0.23 0.011±0.00 N/A
ENSG00000279714 ENST00000623490 0.191±0.00 N/A 0.040±0.00 0.063±0.00 0.129±0.10 0.130±0.00 0.104±0.02 0.053±0.00 0.057±0.02 0.163±0.00 0.077±0.00 0.090±0.08 0.058±0.00 0.156±0.04
ENSG00000279805 ENST00000624395 1.750±0.00 1.251±0.00 0.264±0.00 0.100±0.02 0.819±0.33 0.365±0.21 0.324±0.06 0.452±0.32 0.115±0.05 1.631±0.95 0.272±0.10 0.252±0.17 0.380±0.10 0.221±0.10
ENSG00000279927 ENST00000623420 0.147±0.00 0.393±0.00 N/A 0.146±0.00 0.153±0.00 0.140±0.00 0.107±0.00 0.136±0.00 0.062±0.00 0.150±0.00 0.067±0.00 0.044±0.01 0.071±0.06 0.127±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000010601 ENSMUST00000010745 N/A N/A N/A N/A N/A N/A 0.182±0.00 N/A 0.041±0.00 N/A 0.024±0.00 0.480±0.28 0.165±0.06 0.090±0.00
ENSMUST00000175789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175919 0.253±0.18 0.101±0.00 0.606±0.08 0.095±0.00 0.146±0.10 5.130±2.39 0.083±0.02 0.020±0.01 13.438±12.66 0.175±0.03 0.033±0.00 0.535±0.31 0.845±0.93 0.055±0.02
ENSMUST00000176074 N/A 0.128±0.00 N/A 0.041±0.00 0.130±0.07 0.562±0.21 N/A N/A 15.573±13.11 0.103±0.02 N/A 0.191±0.06 N/A N/A
ENSMUST00000177135 0.094±0.05 N/A N/A N/A 0.130±0.00 N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A 0.047±0.00
ENSMUSG00000033565 ENSMUST00000048145 5.897±0.00 N/A 5.044±0.71 15.049±7.92 4.067±1.07 3.133±0.13 2.772±0.00 0.962±0.02 1.864±0.65 4.370±0.30 2.031±0.44 6.853±2.14 3.799±1.51 0.560±0.00
ENSMUST00000111581 3.721±1.16 N/A 5.234±0.06 N/A 4.812±0.02 N/A 4.555±1.45 N/A 1.159±0.40 3.698±0.00 2.932±1.43 N/A 0.735±0.00 0.631±0.00
ENSMUST00000166610 9.542±3.82 17.958±2.50 9.649±1.93 72.631±0.89 8.526±2.11 7.130±2.82 N/A 2.299±0.67 4.306±0.97 4.088±0.85 1.659±0.00 20.831±9.83 3.864±2.12 0.635±0.00
ENSMUST00000171751 9.977±4.60 5.903±1.21 5.502±0.00 N/A 4.440±1.15 6.404±0.60 3.115±0.00 2.993±1.29 1.619±0.83 10.668±1.00 1.416±0.00 8.263±3.29 2.322±0.49 1.515±0.63
ENSMUSG00000089242 ENSMUST00000158617 N/A N/A N/A 2.424±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000093458 ENSMUST00000176779 0.105±0.01 0.165±0.00 0.086±0.00 N/A 2.177±0.79 0.665±0.41 N/A 0.082±0.00 0.307±0.29 0.103±0.00 0.424±0.00 0.105±0.00 0.117±0.03 0.153±0.09
ENSMUSG00000097267 ENSMUST00000181870 0.667±0.18 0.534±0.38 0.620±0.03 1.461±0.00 0.305±0.12 0.232±0.03 0.104±0.04 0.186±0.20 0.252±0.10 0.568±0.08 0.177±0.08 0.831±0.44 0.581±0.17 2.021±0.42

Loading