C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding protein, fox-1 homolog (C. elegans) 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100320 RBFOX2 9606 - 22:35738736-36028425 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262829 RBFOX2-002 35743933-35840407 protein_coding
  ENST00000359369 RBFOX2-006 35743983-35938897 protein_coding
  ENST00000397303 RBFOX2-009 35743958-35810004 protein_coding
  ENST00000397305 RBFOX2-013 35778028-35840413 protein_coding
  ENST00000405409 RBFOX2-001 35738736-35840587 protein_coding
  ENST00000408983 RBFOX2-012 35768268-35961666 protein_coding
  ENST00000414461 RBFOX2-010 35743602-35840218 protein_coding
  ENST00000416721 RBFOX2-008 35744148-35840284 protein_coding
  ENST00000438146 RBFOX2-005 35744205-36028425 protein_coding
  ENST00000449924 RBFOX2-003 35743602-35840407 protein_coding
  ENST00000463509 RBFOX2-011 35744087-35748632 retained_intron
  ENST00000473487 RBFOX2-014 35760010-35824373 protein_coding
  ENST00000491982 RBFOX2-007 35777656-35840403 retained_intron
  ENST00000495377 RBFOX2-004 35744164-35778032 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyOvaryPlacentaTestisENST00000359369ENST00000397303ENST00000405409
Transcript ID Breast Kidney Ovary Placenta Testis
ENST00000359369 N/A N/A N/A N/A 7.847±0.00
ENST00000397303 N/A N/A 12.802±0.00 19.754±0.00 16.256±0.00
ENST00000405409 2.391±0.00 1.737±0.00 22.238±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099W CIL_00099W_0001 VISTA 22:35286634-35891311
CIL_00094Q CIL_00094Q_0001 VISTA 22:35329925-35944605
CIL_0008TT CIL_0008TT_0001 VISTA 22:35449644-36050666
CIL_0001VM CIL_0001VM_0001 CGP 22:35738736-36166177

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003714 IDA transcription corepressor activity
GO:0003723 IDA:IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0008134 IDA transcription factor binding
GO:0008380 IEA RNA splicing
GO:0010724 IEA regulation of definitive erythrocyte differentiation
GO:0016070 TAS RNA metabolic process
GO:0021942 IEA radial glia guided migration of Purkinje cell
GO:0030520 IDA intracellular estrogen receptor signaling pathway
GO:0042127 TAS regulation of cell proliferation
GO:0043484 IEA regulation of RNA splicing
GO:0044822 IDA poly(A) RNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048813 IEA dendrite morphogenesis
GO:0050885 IEA neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052182 rbfox2 RNA binding protein, fox-1 homolog (C. elegans) 2 protein_coding Danio_rerio
ENSMUSG00000033565 Rbfox2 RNA binding protein, fox-1 homolog (C. elegans) 2 protein_coding Mus_musculus

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