C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C-type lectin domain family 18, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033633 Clec18a 10090 - 8:111058920-111092426 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039597 Clec18a-007 111069497-111082088 protein_coding
  ENSMUST00000186384 Clec18a-001 111069498-111082088 nonsense_mediated_decay
  ENSMUST00000188466 Clec18a-003 111069497-111081862 protein_coding
  ENSMUST00000190222 Clec18a-002 111069498-111092426 nonsense_mediated_decay
  ENSMUST00000190778 Clec18a-006 111058920-111082088 nonsense_mediated_decay
  ENSMUST00000191030 Clec18a-004 111058920-111082088 nonsense_mediated_decay
  ENSMUST00000191469 Clec18a-005 111058920-111082088 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039597ENSMUST00000186384ENSMUST00000188466ENSMUST00000190222ENSMUST00000190778ENSMUST00000191030ENSMUST00000191469
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039597 N/A 0.058±0.03 N/A 0.256±0.00 0.027±0.01 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186384 0.041±0.00 0.013±0.00 0.004±0.00 0.161±0.11 N/A 0.213±0.09 0.232±0.00 N/A 0.028±0.01 0.206±0.06 0.261±0.17 0.015±0.01 N/A
ENSMUST00000188466 0.091±0.01 0.017±0.01 N/A 0.047±0.01 0.156±0.00 0.100±0.00 0.318±0.02 0.008±0.00 N/A N/A 0.216±0.11 N/A N/A
ENSMUST00000190222 0.065±0.00 0.039±0.02 N/A N/A 0.071±0.02 0.151±0.00 0.063±0.00 0.007±0.00 N/A 0.076±0.02 0.153±0.00 0.008±0.00 0.069±0.00
ENSMUST00000190778 N/A N/A N/A 0.028±0.00 N/A N/A 0.062±0.00 N/A N/A 0.067±0.00 N/A N/A 0.030±0.00
ENSMUST00000191030 N/A N/A N/A 0.071±0.00 N/A N/A 0.085±0.01 0.015±0.00 N/A N/A 0.337±0.15 0.006±0.00 0.069±0.00
ENSMUST00000191469 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005576 IEA extracellular region
GO:0008150 ND biological_process
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000140839 CLEC18B C-type lectin domain family 18, member B protein_coding Homo_sapiens
ENSG00000157322 CLEC18A C-type lectin domain family 18, member A protein_coding Homo_sapiens
ENSG00000157335 CLEC18C C-type lectin domain family 18, member C protein_coding Homo_sapiens

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