C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: C-type lectin domain family 18, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188466 Clec18a-003 ENSMUSG00000033633 10090 - 8:111069497-111081862 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverOvaryENSMUST00000188466
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Ovary
ENSMUST00000188466 0.091±0.01 0.017±0.01 0.047±0.01 0.156±0.00 0.100±0.00 0.318±0.02 0.008±0.00 0.216±0.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005576 IEA extracellular region
GO:0008150 ND biological_process
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000288040 CLEC18A-001 protein_coding Homo_sapiens 0 1171
ENST00000314151 CLEC18C-007 protein_coding Homo_sapiens 0 1160
ENST00000339953 CLEC18B-001 protein_coding Homo_sapiens 0 1070
ENST00000393701 CLEC18A-002 protein_coding Homo_sapiens 0 1171
ENST00000449317 CLEC18A-201 protein_coding Homo_sapiens 0 1070
ENST00000536907 CLEC18C-008 protein_coding Homo_sapiens 0 1059
ENST00000541793 CLEC18C-006 protein_coding Homo_sapiens 0 1160
ENST00000564842 CLEC18B-003 retained_intron Homo_sapiens 0 250
ENST00000564976 CLEC18C-002 retained_intron Homo_sapiens 0 732
ENST00000565705 CLEC18A-005 retained_intron Homo_sapiens 0 737
ENST00000568102 CLEC18A-004 retained_intron Homo_sapiens 9.99967e-42 176
ENST00000568461 CLEC18A-003 protein_coding Homo_sapiens 0 1171
ENST00000569201 CLEC18C-004 retained_intron Homo_sapiens 9.99967e-42 176
ENST00000569347 CLEC18C-001 protein_coding Homo_sapiens 0 1160
ENST00000611356 CLEC18C-201 protein_coding Homo_sapiens 0 1133
ENST00000611662 CLEC18C-202 protein_coding Homo_sapiens 0 1134
ENST00000615430 CLEC18A-202 protein_coding Homo_sapiens 0 1171
ENST00000617101 CLEC18B-201 protein_coding Homo_sapiens 0 1166
ENST00000617654 CLEC18A-203 protein_coding Homo_sapiens 0 1094
ENST00000618957 CLEC18C-203 protein_coding Homo_sapiens 0 1160
ENST00000619275 CLEC18B-202 protein_coding Homo_sapiens 0 1166
ENST00000620064 CLEC18A-204 protein_coding Homo_sapiens 0 1166
ENST00000620745 CLEC18B-203 protein_coding Homo_sapiens 0 1160

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