C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: R3H domain and coiled-coil containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034194 R3hcc1 10090 - 14:69697307-69707584 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000118374 R3hcc1-001 69697307-69707584 protein_coding
  ENSMUST00000121142 R3hcc1-002 69697308-69707493 protein_coding
  ENSMUST00000128747 R3hcc1-004 69703478-69705313 retained_intron
  ENSMUST00000138326 R3hcc1-005 69698332-69700021 retained_intron
  ENSMUST00000147609 R3hcc1-003 69705625-69707553 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118374ENSMUST00000121142ENSMUST00000147609
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118374 8.263±1.55 4.705±2.50 6.041±0.16 9.164±0.60 3.975±1.01 4.406±0.98 4.127±0.83 6.015±1.36 5.067±2.37 3.298±0.47 6.974±1.14 10.171±6.23 3.858±1.39 33.176±0.00
ENSMUST00000121142 3.982±1.12 4.461±0.62 N/A 5.742±0.00 3.015±0.22 2.293±0.21 2.375±0.18 2.383±0.46 1.360±0.38 3.232±0.21 2.087±0.78 5.599±1.74 1.537±0.07 N/A
ENSMUST00000147609 N/A 4.474±0.94 N/A N/A 5.412±0.58 6.421±1.30 N/A N/A 2.932±0.00 5.297±1.31 N/A 14.549±1.63 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YD CIL_0007YD_0002 VISTA 14:69222690-69823937
CIL_0008FQ CIL_0008FQ_0002 VISTA 14:69236074-69837250

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088146 r3hcc1 R3H domain and coiled-coil containing 1 protein_coding Danio_rerio
ENSG00000104679 R3HCC1 R3H domain and coiled-coil containing 1 protein_coding Homo_sapiens

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