C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 38, member 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034224 Slc38a8 10090 - 8:119479602-119501698 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036748 Slc38a8-001 119479602-119501698 protein_coding
  ENSMUST00000125594 Slc38a8-005 119486099-119494895 retained_intron
  ENSMUST00000132838 Slc38a8-004 119485521-119496987 protein_coding
  ENSMUST00000133821 Slc38a8-002 119496085-119501695 protein_coding
  ENSMUST00000138061 Slc38a8-003 119494200-119501294 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000036748ENSMUST00000125594ENSMUST00000132838ENSMUST00000133821ENSMUST00000138061
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000036748 0.014±0.00 0.050±0.02 0.018±0.00 0.028±0.01 0.049±0.03 0.037±0.02 0.028±0.02 0.019±0.01 0.013±0.01 0.013±0.00 0.452±0.26 0.137±0.01 N/A
ENSMUST00000125594 N/A N/A N/A N/A N/A 0.086±0.03 N/A 0.031±0.00 N/A N/A 0.428±0.07 N/A N/A
ENSMUST00000132838 0.059±0.00 0.069±0.02 0.022±0.00 0.092±0.00 0.066±0.01 0.072±0.04 N/A N/A 0.013±0.00 0.046±0.01 0.400±0.23 N/A N/A
ENSMUST00000133821 N/A N/A N/A N/A 0.034±0.00 N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A
ENSMUST00000138061 N/A N/A 0.015±0.00 N/A N/A 0.046±0.01 N/A N/A N/A N/A 0.936±0.00 N/A 0.278±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Y4 CIL_0004Y4_0003 CGP 8:119446719-119501698
CIL_00057A CIL_00057A_0003 CGP 8:119479602-119558761

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006814 IEA sodium ion transport
GO:0006865 IEA amino acid transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009482 SLC38A8 (1 of 2) solute carrier family 38, member 8 protein_coding Danio_rerio
ENSDARG00000054196 CR352249.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000166558 SLC38A8 solute carrier family 38, member 8 protein_coding Homo_sapiens

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