C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 54
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022356 Usp54-001 ENSMUSG00000034235 10090 - 14:20548912-20607228 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022356
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022356 2.931±1.51 3.569±1.05 3.137±1.34 6.913±5.22 1.781±0.44 1.692±0.62 1.521±0.41 3.043±0.70 0.676±0.15 6.273±0.47 0.683±0.15 5.532±2.57 1.374±0.45 2.838±1.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00008Z CIL_00008Z_0002 CGP 14:20499364-20618354
CIL_0000Q5 CIL_0000Q5_0003 CGP 14:20548912-20656540

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008150 ND biological_process
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339859 USP54-014 protein_coding Homo_sapiens 0 2314
ENST00000408019 USP54-201 protein_coding Homo_sapiens 0 2314
ENST00000413442 USP54-012 protein_coding Homo_sapiens 0 686
ENST00000418501 USP54-006 nonsense_mediated_decay Homo_sapiens 0 1663
ENST00000422491 USP54-202 protein_coding Homo_sapiens 0 1663
ENST00000424265 USP54-007 nonsense_mediated_decay Homo_sapiens 0 1661
ENST00000433394 USP54-011 protein_coding Homo_sapiens 0 339
ENST00000451492 USP54-013 protein_coding Homo_sapiens 0 549
ENST00000461520 USP54-009 processed_transcript Homo_sapiens 0 1572
ENST00000464635 USP54-010 retained_intron Homo_sapiens 0 254
ENST00000466048 USP54-008 nonsense_mediated_decay Homo_sapiens 0 1037
ENST00000480210 USP54-003 processed_transcript Homo_sapiens 0 488
ENST00000481991 USP54-002 processed_transcript Homo_sapiens 0 440
ENST00000497106 USP54-005 processed_transcript Homo_sapiens 0 2279
ENST00000498143 USP54-001 retained_intron Homo_sapiens 0 1572

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