C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: histone deacetylase 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034245 Hdac11 10090 + 6:91156665-91174692 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041736 Hdac11-001 91156665-91174692 protein_coding
  ENSMUST00000127768 Hdac11-004 91157164-91167848 retained_intron
  ENSMUST00000134154 Hdac11-006 91171764-91173283 retained_intron
  ENSMUST00000143621 Hdac11-005 91156826-91166522 protein_coding
  ENSMUST00000154389 Hdac11-003 91156818-91159719 retained_intron
  ENSMUST00000155007 Hdac11-002 91157397-91173516 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041736ENSMUST00000154389ENSMUST00000155007
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041736 5.919±3.70 4.878±1.53 9.774±0.39 27.277±5.96 11.433±5.35 11.774±2.60 8.880±0.44 13.944±1.35 16.734±9.84 7.841±0.96 3.755±0.43 15.027±4.73 0.860±0.55 55.426±24.07
ENSMUST00000154389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.257±0.00 N/A
ENSMUST00000155007 N/A N/A N/A 56.099±0.00 N/A N/A N/A N/A N/A N/A N/A 15.972±0.00 0.252±0.10 59.524±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000518 CIL_000518_0002 CGP 6:91013068-91174692
CIL_0004U8 CIL_0004U8_0003 CGP 6:91156665-91272540

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 TAS histone deacetylase complex
GO:0004407 TAS histone deacetylase activity
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005737 TAS cytoplasm
GO:0005886 IEA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008134 TAS transcription factor binding
GO:0014003 IEA oligodendrocyte development
GO:0016568 TAS chromatin modification
GO:0016575 IEA histone deacetylation
GO:0032041 IEA NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0046969 IEA NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970 IEA NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0070062 IEA extracellular vesicular exosome
GO:0070932 IEA histone H3 deacetylation
GO:0070933 IEA histone H4 deacetylation
GO:0097372 IEA NAD-dependent histone deacetylase activity (H3-K18 specific)

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037346 hdac11 histone deacetylase 11 protein_coding Danio_rerio
ENSDARG00000087573 HDAC11 (2 of 2) histone deacetylase 11 protein_coding Danio_rerio
ENSG00000163517 HDAC11 histone deacetylase 11 protein_coding Homo_sapiens

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