C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: zinc finger, CCHC domain containing 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106673 Zcchc11-005 ENSMUSG00000034610 10090 + 4:108459426-108479153 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENSMUST00000106673
Transcript ID Colon
ENSMUST00000106673 2.909±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VF CIL_0001VF_0002 CGP 4:108400390-108559421

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001816 IDA cytokine production
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0031664 IDA regulation of lipopolysaccharide-mediated signaling pathway
GO:0032088 IDA negative regulation of NF-kappaB transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257177 ZCCHC11-005 protein_coding Homo_sapiens 0 324
ENST00000355809 ZCCHC11-003 protein_coding Homo_sapiens 0 335
ENST00000371544 ZCCHC11-001 protein_coding Homo_sapiens 0 387
ENST00000470626 ZCCHC11-013 protein_coding Homo_sapiens 7e-29 132
ENST00000473856 ZCCHC11-014 nonsense_mediated_decay Homo_sapiens 0 363
ENST00000484723 ZCCHC11-017 protein_coding Homo_sapiens 3e-32 145
ENST00000524582 ZCCHC11-018 protein_coding Homo_sapiens 0 392
ENST00000528642 ZCCHC11-012 protein_coding Homo_sapiens 0 370

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