C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger, CCHC domain containing 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128042 Zcchc11-002 ENSMUSG00000034610 10090 + 4:108555736-108559054 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverTestisENSMUST00000128042
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Testis
ENSMUST00000128042 7.022±0.00 11.059±1.07 35.063±0.00 6.984±0.00 5.528±1.28 5.908±0.58 14.265±6.26 12.151±2.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VF CIL_0001VF_0002 CGP 4:108400390-108559421

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001816 IDA cytokine production
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0031664 IDA regulation of lipopolysaccharide-mediated signaling pathway
GO:0032088 IDA negative regulation of NF-kappaB transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257177 ZCCHC11-005 protein_coding Homo_sapiens 0 656
ENST00000371544 ZCCHC11-001 protein_coding Homo_sapiens 0 656
ENST00000466440 ZCCHC11-006 retained_intron Homo_sapiens 0 416
ENST00000471623 ZCCHC11-015 protein_coding Homo_sapiens 0 416
ENST00000494469 ZCCHC11-007 protein_coding Homo_sapiens 0 656
ENST00000527941 ZCCHC11-020 nonsense_mediated_decay Homo_sapiens 0 368
ENST00000528457 ZCCHC11-021 protein_coding Homo_sapiens 0 278

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