C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(A) binding protein, cytoplasmic 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034732 Pabpc5 10090 + X:119927196-119930165 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040961 Pabpc5-001 119927196-119930165 protein_coding
  ENSMUST00000113366 Pabpc5-002 119927225-119930009 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000040961ENSMUST00000113366
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000040961 0.096±0.08 0.045±0.01 0.355±0.00 0.085±0.02 0.065±0.00 0.018±0.00 0.046±0.00 0.008±0.00 N/A 0.106±0.09 0.030±0.00 0.075±0.00
ENSMUST00000113366 0.131±0.06 0.034±0.00 0.289±0.00 0.120±0.03 0.085±0.00 0.022±0.00 0.111±0.05 0.008±0.00 0.076±0.00 0.091±0.07 0.005±0.00 0.059±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007B7 CIL_0007B7_0002 CGP X:118479708-119930165
CIL_0007B8 CIL_0007B8_0002 CGP X:119927196-120910619

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059259 pabpc4 poly(A) binding protein, cytoplasmic 4 (inducible form) protein_coding Danio_rerio
ENSG00000174740 PABPC5 poly(A) binding protein, cytoplasmic 5 protein_coding Homo_sapiens

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