C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007B8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000174740-ENSG00000102290 CGP 9606 X:91434595-92623230
GeneTranscriptPositionBiotype
ENSG00000102290 (PCDH11X)
protocadherin 11 X-linked 		ENST00000298274 (PCDH11X-005) 91779261-91884007 processed_transcript
ENST00000361655 (PCDH11X-007) 91835505-92619076 protein_coding
ENST00000361724 (PCDH11X-004) 91834660-91879998 retained_intron
ENST00000373088 (PCDH11X-003) 91835505-92619076 protein_coding
ENST00000373094 (PCDH11X-001) 91834660-92623230 protein_coding
ENST00000373097 (PCDH11X-002) 91834660-92623227 protein_coding
ENST00000395337 (PCDH11X-201) 91779305-91880061 protein_coding
ENST00000406881 (PCDH11X-008) 91835505-92619076 protein_coding
ENST00000504220 (PCDH11X-006) 91835505-92619076 protein_coding
ENSG00000174740 (PABPC5)
poly(A) binding protein, cytoplasmic 5 		ENST00000312600 (PABPC5-001) 91434824-91438584 protein_coding
ENST00000373105 (PABPC5-002) 91434595-91437000 protein_coding
ENSG00000215089 (KRT18P11)
keratin 18 pseudogene 11 		ENST00000435214 (KRT18P11-001) 92459670-92460952 processed_pseudogene
ENSG00000229132 (EIF4A1P10)
eukaryotic translation initiation factor 4A1 pseudogene 10 		ENST00000428832 (EIF4A1P10-001) 92113246-92114461 processed_pseudogene
ENSG00000234161 (PABPC5-AS1)
PABPC5 antisense RNA 1 		ENST00000456187 (PABPC5-AS1-001) 91414878-91434999 antisense
ENSG00000234702 (VDAC1P3)
voltage-dependent anion channel 1 pseudogene 3 		ENST00000434069 (VDAC1P3-001) 91982655-91983505 processed_pseudogene
CIL_0007B8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034732-ENSMUSG00000034755 CGP 10090 X:119927196-120910619
GeneTranscriptPositionBiotype
ENSMUSG00000034732 (Pabpc5)
poly(A) binding protein, cytoplasmic 5 		ENSMUST00000040961 (Pabpc5-001) 119927196-119930165 protein_coding
ENSMUST00000113366 (Pabpc5-002) 119927225-119930009 protein_coding
ENSMUSG00000034755 (Pcdh11x)
protocadherin 11 X-linked 		ENSMUST00000050239 (Pcdh11x-201) 120290259-120906344 protein_coding
ENSMUST00000113358 (Pcdh11x-001) 120290259-120910619 protein_coding
ENSMUST00000113364 (Pcdh11x-202) 120290403-120906344 protein_coding
ENSMUST00000155223 (Pcdh11x-002) 120401364-120906344 nonsense_mediated_decay
ENSMUSG00000081546 (Gm14927)
predicted gene 14927 		ENSMUST00000120283 (Gm14927-001) 120371212-120371665 processed_pseudogene
ENSMUSG00000081728 (Gm14930)
predicted gene 14930 		ENSMUST00000118864 (Gm14930-001) 120442035-120442686 processed_pseudogene
ENSMUSG00000082718 (Gm14928)
predicted gene 14928 		ENSMUST00000120198 (Gm14928-001) 120178939-120179415 processed_pseudogene
ENSMUSG00000082927 (Gm5863)
predicted gene 5863 		ENSMUST00000121760 (Gm5863-001) 120160710-120161717 processed_pseudogene
ENSMUSG00000083151 (Gm4913)
predicted gene 4913 		ENSMUST00000117075 (Gm4913-001) 119966284-119967573 processed_pseudogene
ENSMUSG00000083321 (Gm14931)
predicted gene 14931 		ENSMUST00000111079 (Gm14931-001) 120345362-120345614 processed_pseudogene
ENSMUSG00000083616 (H2afb3)
H2A histone family, member B3 		ENSMUST00000122050 (H2afb3-001) 120312748-120313095 protein_coding
ENSMUSG00000084172 (Gm16420)
predicted gene 16420 		ENSMUST00000120258 (Gm16420-001) 120114974-120115829 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007B8_0001ENSG00000102290ENST00000298274ENST00000361655ENST00000361724ENST00000373088ENST00000373094ENST00000373097ENST00000395337ENST00000406881ENST00000504220ENSG00000174740ENST00000312600ENST00000373105ENSG00000215089ENST00000435214ENSG00000229132ENST00000428832ENSG00000234161ENST00000456187ENSG00000234702ENST00000434069CIL_0007B8_0002ENSMUSG00000034732ENSMUST00000040961ENSMUST00000113366ENSMUSG00000034755ENSMUST00000050239ENSMUST00000113358ENSMUST00000113364ENSMUST00000155223ENSMUSG00000081546ENSMUST00000120283ENSMUSG00000081728ENSMUST00000118864ENSMUSG00000082718ENSMUST00000120198ENSMUSG00000082927ENSMUST00000121760ENSMUSG00000083151ENSMUST00000117075ENSMUSG00000083321ENSMUST00000111079ENSMUSG00000083616ENSMUST00000122050ENSMUSG00000084172ENSMUST00000120258
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007B8_0001ENSG00000102290ENST00000298274ENST00000361655ENST00000361724ENST00000373088ENST00000373094ENST00000373097ENST00000395337ENST00000406881ENST00000504220ENSG00000174740ENST00000312600ENST00000373105ENSG00000215089ENST00000435214ENSG00000229132ENST00000428832ENSG00000234161ENST00000456187ENSG00000234702ENST00000434069CIL_0007B8_0002ENSMUSG00000034732ENSMUST00000040961ENSMUST00000113366ENSMUSG00000034755ENSMUST00000050239ENSMUST00000113358ENSMUST00000113364ENSMUST00000155223ENSMUSG00000081546ENSMUST00000120283ENSMUSG00000081728ENSMUST00000118864ENSMUSG00000082718ENSMUST00000120198ENSMUSG00000082927ENSMUST00000121760ENSMUSG00000083151ENSMUST00000117075ENSMUSG00000083321ENSMUST00000111079ENSMUSG00000083616ENSMUST00000122050ENSMUSG00000084172ENSMUST00000120258
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000102290 ENST00000298274 0.035±0.00 0.038±0.00 0.020±0.00 0.387±0.00 0.038±0.01 0.023±0.00 0.010±0.01 0.008±0.00 0.088±0.07 0.163±0.15 0.008±0.00 0.117±0.13 0.061±0.02 0.027±0.00
ENST00000361655 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.489±0.00 0.120±0.00 N/A
ENST00000361724 N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A N/A N/A 0.009±0.00
ENST00000373088 N/A N/A N/A 1.559±0.00 N/A N/A 0.003±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000373094 N/A N/A N/A N/A N/A N/A N/A 0.002±0.00 N/A N/A N/A 0.036±0.00 N/A 0.006±0.00
ENST00000373097 N/A N/A N/A N/A 0.016±0.00 N/A N/A 0.002±0.00 N/A N/A N/A N/A N/A N/A
ENST00000395337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 0.247±0.00 N/A N/A
ENST00000406881 N/A N/A N/A 0.414±0.00 N/A N/A N/A N/A N/A N/A N/A 0.074±0.00 0.158±0.00 N/A
ENST00000504220 N/A N/A N/A N/A N/A 0.041±0.00 0.003±0.00 N/A 0.267±0.00 N/A N/A N/A N/A N/A
ENSG00000174740 ENST00000312600 0.262±0.00 0.232±0.00 N/A 0.354±0.03 0.251±0.01 0.334±0.16 0.061±0.04 0.130±0.00 0.474±0.44 0.421±0.16 0.015±0.00 0.261±0.18 0.057±0.02 0.333±0.09
ENST00000373105 0.622±0.00 N/A 0.309±0.00 0.379±0.02 0.558±0.00 0.200±0.00 0.169±0.02 0.290±0.09 0.375±0.00 0.170±0.00 0.163±0.00 1.375±1.33 0.175±0.07 0.547±0.01
ENSG00000215089 ENST00000435214 N/A N/A N/A 0.128±0.00 N/A 0.018±0.00 N/A N/A N/A 0.131±0.00 N/A 0.130±0.00 0.425±0.00 N/A
ENSG00000229132 ENST00000428832 0.048±0.00 N/A N/A 0.068±0.00 N/A 0.036±0.00 0.011±0.00 0.013±0.00 0.034±0.00 N/A 0.033±0.00 0.213±0.00 0.071±0.00 N/A
ENSG00000234161 ENST00000456187 0.099±0.00 0.034±0.00 N/A 1.199±0.69 0.171±0.00 0.407±0.00 0.338±0.00 N/A 4.003±0.00 2.774±0.00 N/A 0.926±0.85 N/A 0.087±0.06
ENSG00000234702 ENST00000434069 N/A N/A N/A 0.054±0.00 N/A 0.049±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034732 ENSMUST00000040961 0.096±0.08 N/A 0.045±0.01 0.355±0.00 0.085±0.02 0.065±0.00 0.018±0.00 0.046±0.00 0.008±0.00 N/A N/A 0.106±0.09 0.030±0.00 0.075±0.00
ENSMUST00000113366 0.131±0.06 N/A 0.034±0.00 0.289±0.00 0.120±0.03 0.085±0.00 0.022±0.00 0.111±0.05 0.008±0.00 0.076±0.00 N/A 0.091±0.07 0.005±0.00 0.059±0.04
ENSMUSG00000034755 ENSMUST00000050239 0.034±0.03 0.129±0.00 N/A N/A 0.077±0.05 0.024±0.00 N/A 0.007±0.00 0.009±0.01 N/A N/A 0.258±0.14 0.008±0.00 0.029±0.02
ENSMUST00000113358 0.021±0.00 N/A 0.011±0.00 0.835±0.28 0.015±0.00 N/A 0.012±0.00 N/A 0.008±0.00 N/A 0.005±0.00 0.062±0.05 0.003±0.00 0.013±0.01
ENSMUST00000113364 0.135±0.06 0.122±0.00 0.039±0.00 N/A N/A N/A N/A N/A 0.007±0.00 0.027±0.01 0.006±0.00 0.129±0.14 N/A 0.023±0.00
ENSMUST00000155223 0.134±0.06 0.097±0.06 0.046±0.00 N/A 0.044±0.03 0.046±0.01 0.022±0.01 0.020±0.01 0.021±0.01 0.066±0.04 0.016±0.01 0.246±0.15 N/A 0.034±0.01
ENSMUSG00000081546 ENSMUST00000120283 N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081728 ENSMUST00000118864 N/A N/A 0.014±0.00 0.130±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.095±0.00 N/A
ENSMUSG00000082718 ENSMUST00000120198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.360±0.00 N/A N/A
ENSMUSG00000082927 ENSMUST00000121760 0.136±0.11 0.051±0.00 0.017±0.01 0.402±0.38 0.358±0.33 0.081±0.02 0.040±0.02 0.060±0.04 0.037±0.04 0.033±0.00 0.043±0.01 0.151±0.10 0.191±0.13 0.030±0.00
ENSMUSG00000083151 ENSMUST00000117075 N/A N/A N/A N/A N/A N/A N/A 0.024±0.00 N/A N/A N/A N/A N/A N/A
ENSMUSG00000083321 ENSMUST00000111079 N/A N/A 0.116±0.00 0.164±0.04 N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000083616 ENSMUST00000122050 N/A N/A N/A 0.160±0.00 0.258±0.10 0.234±0.00 N/A N/A 0.055±0.00 N/A N/A 0.383±0.00 0.029±0.00 5.029±2.59
ENSMUSG00000084172 ENSMUST00000120258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.472±0.46

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