C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 54
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034826 Nup54 10090 - 5:92415540-92435219 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038514 Nup54-001 92415540-92435219 protein_coding
  ENSMUST00000122893 Nup54-002 92428021-92435091 retained_intron
  ENSMUST00000123694 Nup54-007 92416209-92417972 retained_intron
  ENSMUST00000130156 Nup54-005 92430908-92434757 protein_coding
  ENSMUST00000135112 Nup54-003 92430900-92435123 protein_coding
  ENSMUST00000142525 Nup54-006 92425750-92434546 processed_transcript
  ENSMUST00000146470 Nup54-004 92428292-92435114 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038514ENSMUST00000122893ENSMUST00000123694ENSMUST00000142525
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038514 4.691±0.98 4.254±1.03 4.032±0.45 7.748±1.82 3.741±1.47 3.764±0.69 2.819±0.94 4.903±0.65 8.400±4.08 4.246±1.13 1.800±0.74 4.613±1.29 10.222±2.59 4.440±0.39
ENSMUST00000122893 4.914±1.08 N/A N/A N/A 1.928±0.06 1.649±0.00 2.375±0.00 3.254±0.00 N/A N/A N/A 6.779±2.12 N/A N/A
ENSMUST00000123694 N/A N/A N/A 20.863±0.00 N/A N/A N/A N/A N/A N/A N/A 60.519±0.00 87.691±52.58 15.150±0.00
ENSMUST00000142525 6.555±4.15 1.461±0.00 N/A 8.672±0.00 3.301±0.31 1.431±0.00 N/A 2.482±0.30 N/A N/A N/A 3.172±0.71 N/A 7.068±3.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VL CIL_0008VL_0002 VISTA 5:92327753-92928377
CIL_00071G CIL_00071G_0002 CGP 5:92415540-92505608

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005487 IEA nucleocytoplasmic transporter activity
GO:0005515 IEA protein binding
GO:0005643 IEA nuclear pore
GO:0006605 IEA protein targeting
GO:0006913 IEA nucleocytoplasmic transport
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045348 NUP54 nucleoporin 54kDa protein_coding Danio_rerio
ENSG00000138750 NUP54 nucleoporin 54kDa protein_coding Homo_sapiens

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