C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 54
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038514 Nup54-001 ENSMUSG00000034826 10090 - 5:92415540-92435219 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038514
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038514 4.691±0.98 4.254±1.03 4.032±0.45 7.748±1.82 3.741±1.47 3.764±0.69 2.819±0.94 4.903±0.65 8.400±4.08 4.246±1.13 1.800±0.74 4.613±1.29 10.222±2.59 4.440±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VL CIL_0008VL_0002 VISTA 5:92327753-92928377
CIL_00071G CIL_00071G_0002 CGP 5:92415540-92505608

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005487 IEA nucleocytoplasmic transporter activity
GO:0005515 IEA protein binding
GO:0005643 IEA nuclear pore
GO:0006605 IEA protein targeting
GO:0006913 IEA nucleocytoplasmic transport
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264883 NUP54-001 protein_coding Homo_sapiens 0 1847
ENST00000502850 NUP54-003 nonsense_mediated_decay Homo_sapiens 0 1037
ENST00000507257 NUP54-002 nonsense_mediated_decay Homo_sapiens 0 643
ENST00000508465 NUP54-017 processed_transcript Homo_sapiens 0 353
ENST00000508604 NUP54-006 retained_intron Homo_sapiens 0 405
ENST00000512151 NUP54-005 nonsense_mediated_decay Homo_sapiens 0 1234
ENST00000513248 NUP54-018 retained_intron Homo_sapiens 0 368
ENST00000514313 NUP54-015 retained_intron Homo_sapiens 0 372
ENST00000514987 NUP54-004 protein_coding Homo_sapiens 0 1461
ENST00000515460 NUP54-008 processed_transcript Homo_sapiens 0 725

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