C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 54kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138750 NUP54 9606 - 4:76114659-76148515 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264883 NUP54-001 76114664-76148515 protein_coding
  ENST00000502850 NUP54-003 76115087-76148405 nonsense_mediated_decay
  ENST00000504173 NUP54-016 76124580-76148444 retained_intron
  ENST00000506098 NUP54-013 76136321-76147821 processed_transcript
  ENST00000507257 NUP54-002 76114659-76148416 nonsense_mediated_decay
  ENST00000508465 NUP54-017 76115104-76130701 processed_transcript
  ENST00000508583 NUP54-007 76144130-76148434 processed_transcript
  ENST00000508604 NUP54-006 76114659-76130851 retained_intron
  ENST00000510569 NUP54-014 76144149-76145820 processed_transcript
  ENST00000510884 NUP54-012 76144184-76148200 processed_transcript
  ENST00000512151 NUP54-005 76115301-76148397 nonsense_mediated_decay
  ENST00000513248 NUP54-018 76115438-76118437 retained_intron
  ENST00000513352 NUP54-010 76144197-76148397 nonsense_mediated_decay
  ENST00000514307 NUP54-011 76136188-76148202 processed_transcript
  ENST00000514313 NUP54-015 76132320-76134311 retained_intron
  ENST00000514901 NUP54-009 76144130-76148398 protein_coding
  ENST00000514987 NUP54-004 76115206-76148397 protein_coding
  ENST00000515460 NUP54-008 76134176-76148377 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264883ENST00000502850ENST00000507257ENST00000508465ENST00000512151ENST00000514307ENST00000514901ENST00000514987ENST00000515460
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264883 1.754±0.00 N/A N/A N/A 1.998±0.00 5.164±1.20 1.773±0.47 6.635±0.00 3.237±0.95 2.060±0.69 0.978±0.00 8.713±3.49 7.233±1.00 2.780±0.27
ENST00000502850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.333±0.00 N/A N/A N/A
ENST00000507257 N/A N/A 0.621±0.00 1.436±0.56 1.939±0.00 1.699±0.00 N/A 2.855±0.00 1.160±0.00 N/A 1.523±0.00 N/A N/A N/A
ENST00000508465 5.335±0.00 8.937±0.00 N/A N/A 5.657±0.00 5.122±0.00 1.929±0.00 N/A 2.171±0.00 2.247±0.00 N/A N/A N/A N/A
ENST00000512151 N/A N/A N/A N/A 3.022±0.00 N/A 1.258±0.23 N/A N/A N/A N/A 3.725±1.22 5.428±0.00 6.278±0.00
ENST00000514307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.773±0.00 8.172±0.00 11.013±0.00 N/A
ENST00000514901 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.559±0.00 N/A 20.238±0.00
ENST00000514987 3.250±0.00 5.187±0.00 N/A 3.685±0.00 2.114±0.46 N/A N/A N/A N/A 1.505±0.00 1.444±0.00 N/A N/A 3.688±0.00
ENST00000515460 N/A N/A 3.377±0.00 6.007±0.00 6.900±0.00 8.720±0.00 3.667±0.00 N/A 10.079±0.00 16.697±0.00 2.144±0.00 7.428±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VL CIL_0008VL_0001 VISTA 4:76031495-76631676
CIL_00071G CIL_00071G_0001 CGP 4:76114659-76213893

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005487 IEA nucleocytoplasmic transporter activity
GO:0005515 IEA protein binding
GO:0005635 TAS nuclear envelope
GO:0005643 IEA nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005737 TAS cytoplasm
GO:0005975 TAS carbohydrate metabolic process
GO:0006605 IEA protein targeting
GO:0006913 IEA nucleocytoplasmic transport
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0044281 TAS small molecule metabolic process
GO:0051028 IEA mRNA transport
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045348 NUP54 nucleoporin 54kDa protein_coding Danio_rerio
ENSMUSG00000034826 Nup54 nucleoporin 54 protein_coding Mus_musculus

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