C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GC-rich sequence DNA binding factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043195 Gcfc2-001 ENSMUSG00000035125 10090 + 6:81923669-81959915 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryTestisENSMUST00000043195
Transcript ID Ovary Testis
ENSMUST00000043195 1.398±0.00 0.526±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000245 ISS spliceosomal complex assembly
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005634 ISS nucleus
GO:0005730 ISS nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0071008 ISS U2-type post-mRNA release spliceosomal complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000321027 GCFC2-001 protein_coding Homo_sapiens 0 1685
ENST00000409857 GCFC2-004 protein_coding Homo_sapiens 0 193
ENST00000470503 GCFC2-003 protein_coding Homo_sapiens 0 261
ENST00000472230 GCFC2-005 nonsense_mediated_decay Homo_sapiens 0 1648
ENST00000541687 GCFC2-201 protein_coding Homo_sapiens 0 331

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