C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035235 Trim13 10090 + 14:61598226-61605946 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039562 Trim13-201 61599512-61605946 protein_coding
  ENSMUST00000165015 Trim13-202 61598226-61605946 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039562ENSMUST00000165015
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039562 2.667±0.65 0.772±0.00 13.851±2.84 11.083±7.48 2.039±1.34 0.898±0.25 3.069±0.58 3.207±0.44 1.548±1.01 3.450±0.81 4.437±0.84 3.293±2.01 4.916±2.37 3.341±1.10
ENSMUST00000165015 N/A 1.067±0.42 N/A N/A N/A 0.711±0.00 N/A N/A 0.807±0.46 N/A N/A 1.755±1.08 0.787±0.34 5.153±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PF CIL_0004PF_0003 CGP 14:61531993-61605946
CIL_0000UW CIL_0000UW_0002 CGP 14:61598226-61611916

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0004871 IEA signal transducer activity
GO:0005737 IDA cytoplasm
GO:0005789 ISS endoplasmic reticulum membrane
GO:0007165 IEA signal transduction
GO:0008270 IEA zinc ion binding
GO:0010332 ISS response to gamma radiation
GO:0010942 IEA positive regulation of cell death
GO:0016021 IEA integral component of membrane
GO:0016239 ISS positive regulation of macroautophagy
GO:0016874 IEA ligase activity
GO:0030433 ISS ER-associated ubiquitin-dependent protein catabolic process
GO:0032897 IEA negative regulation of viral transcription
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045087 IEA innate immune response
GO:0051092 IEA positive regulation of NF-kappaB transcription factor activity
GO:0051865 ISS protein autoubiquitination
GO:0097038 ISS perinuclear endoplasmic reticulum
GO:1902187 IEA negative regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010010 trim13 tripartite motif-containing 13 protein_coding Danio_rerio
ENSG00000204977 TRIM13 tripartite motif containing 13 protein_coding Homo_sapiens

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