C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204977 TRIM13 9606 + 13:49995888-50020481 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000356017 TRIM13-006 49997037-50013180 protein_coding
  ENST00000378182 TRIM13-005 49997032-50018451 protein_coding
  ENST00000378183 TRIM13-004 49996503-50012740 protein_coding
  ENST00000420995 TRIM13-001 49997019-50014331 protein_coding
  ENST00000442421 TRIM13-002 49995888-50012327 protein_coding
  ENST00000457662 TRIM13-003 49997059-50013168 protein_coding
  ENST00000474805 TRIM13-007 49996813-50020481 processed_transcript
  ENST00000478111 TRIM13-008 49997019-50020481 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356017ENST00000378182ENST00000378183ENST00000420995ENST00000457662
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356017 N/A N/A N/A 2.721±0.00 2.662±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000378182 0.808±0.00 1.154±0.00 N/A 1.032±0.60 1.661±0.43 1.456±0.97 0.812±0.18 1.282±0.14 2.246±0.00 1.577±0.22 N/A 1.498±0.12 0.582±0.19 1.509±0.00
ENST00000378183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.893±0.00
ENST00000420995 N/A N/A N/A N/A N/A N/A N/A N/A 4.455±0.00 N/A N/A N/A N/A N/A
ENST00000457662 2.870±0.00 7.945±0.00 4.229±0.00 2.381±0.00 N/A 4.534±1.58 4.452±0.00 5.295±0.00 2.514±0.00 9.373±2.37 3.843±0.19 7.591±1.33 5.317±1.18 41.247±16.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PF CIL_0004PF_0002 CGP 13:49912706-50020481
CIL_0000UW CIL_0000UW_0001 CGP 13:49995888-50020922

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0004871 IMP signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005789 IDA endoplasmic reticulum membrane
GO:0007165 IMP signal transduction
GO:0008270 IEA zinc ion binding
GO:0009653 TAS anatomical structure morphogenesis
GO:0010332 IEP response to gamma radiation
GO:0010942 IDA positive regulation of cell death
GO:0016021 IEA integral component of membrane
GO:0016239 IDA positive regulation of macroautophagy
GO:0016874 IEA ligase activity
GO:0030433 IDA ER-associated ubiquitin-dependent protein catabolic process
GO:0032897 IDA negative regulation of viral transcription
GO:0043123 IMP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045087 IDA innate immune response
GO:0046872 IEA metal ion binding
GO:0051092 IMP positive regulation of NF-kappaB transcription factor activity
GO:0051865 IDA protein autoubiquitination
GO:0097038 IDA perinuclear endoplasmic reticulum
GO:1902187 IDA negative regulation of viral release from host cell

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010010 trim13 tripartite motif-containing 13 protein_coding Danio_rerio
ENSMUSG00000035235 Trim13 tripartite motif-containing 13 protein_coding Mus_musculus

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