C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sarcoglycan, gamma (dystrophin-associated glycoprotein)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035296 Sgcg 10090 - 14:61221059-61258490 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000077954 Sgcg-001 61221059-61258490 protein_coding
  ENSMUST00000121148 Sgcg-002 61221444-61258424 protein_coding
  ENSMUST00000129886 Sgcg-003 61222816-61232440 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLungMuscleOvaryENSMUST00000077954ENSMUST00000121148
Transcript ID Adipose Bladder Breast Colon Heart Kidney Lung Muscle Ovary
ENSMUST00000077954 2.240±0.12 5.140±0.00 12.741±1.14 N/A 75.194±18.75 0.742±0.39 4.701±2.06 58.798±4.63 1.110±0.35
ENSMUST00000121148 N/A N/A N/A 0.256±0.00 N/A N/A N/A N/A 1.246±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZO CIL_0007ZO_0002 VISTA 14:60704739-61305741
CIL_0008P8 CIL_0008P8_0002 VISTA 14:60705067-61305254
CIL_0005YX CIL_0005YX_0002 CGP 14:61138457-61258490

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005887 TAS integral component of plasma membrane
GO:0016011 IDA dystroglycan complex
GO:0016012 IDA sarcoglycan complex
GO:0042383 IDA sarcolemma
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038107 sgcg sarcoglycan, gamma protein_coding Danio_rerio
ENSDARG00000090096 sgcg sarcoglycan, gamma protein_coding Danio_rerio
ENSG00000102683 SGCG sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) protein_coding Homo_sapiens

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