C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0005YX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000062627-ENSDARG00000090096 CGP 7955 15:21844509-21928012
GeneTranscriptPositionBiotype
ENSDARG00000062627 (sacs)
spastic ataxia of Charlevoix-Saguenay (sacsin)
ENSDART00000149153 (sacs-001) 21844509-21893734 protein_coding
ENSDARG00000097056 (si:ch73-346g24.5)
si:ch73-346g24.5
ENSDART00000153814 (si:ch73-346g24.5-002) 21915993-21917403 antisense
ENSDART00000154169 (si:ch73-346g24.5-001) 21914082-21916382 antisense
ENSDARG00000097304 (si:ch73-346g24.2)
si:ch73-346g24.2
ENSDART00000156055 (si:ch73-346g24.2-001) 21845830-21849828 antisense
CIL_0005YX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048279-ENSMUSG00000035296 CGP 10090 14:61138457-61258490
GeneTranscriptPositionBiotype
ENSMUSG00000035296 (Sgcg)
sarcoglycan, gamma (dystrophin-associated glycoprotein)
ENSMUST00000077954 (Sgcg-001) 61221059-61258490 protein_coding
ENSMUST00000121148 (Sgcg-002) 61221444-61258424 protein_coding
ENSMUST00000129886 (Sgcg-003) 61222816-61232440 protein_coding
ENSMUSG00000048279 (Sacs)
sacsin
ENSMUST00000089394 (Sacs-001) 61138457-61240695 protein_coding
ENSMUST00000119509 (Sacs-002) 61138491-61199666 protein_coding
ENSMUST00000119943 (Sacs-005) 61148052-61215497 protein_coding
ENSMUST00000121091 (Sacs-003) 61172990-61195663 protein_coding
ENSMUST00000150222 (Sacs-004) 61188807-61204920 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005YX_0001ENSDARG00000062627ENSDART00000149153ENSDARG00000097056ENSDART00000153814ENSDART00000154169ENSDARG00000097304ENSDART00000156055CIL_0005YX_0002ENSMUSG00000035296ENSMUST00000077954ENSMUST00000121148ENSMUST00000129886ENSMUSG00000048279ENSMUST00000089394ENSMUST00000119509ENSMUST00000119943ENSMUST00000121091ENSMUST00000150222
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005YX_0001ENSDARG00000062627ENSDART00000149153ENSDARG00000097056ENSDART00000153814ENSDART00000154169ENSDARG00000097304ENSDART00000156055CIL_0005YX_0002ENSMUSG00000035296ENSMUST00000077954ENSMUST00000121148ENSMUSG00000048279ENSMUST00000089394ENSMUST00000119509ENSMUST00000119943ENSMUST00000121091
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000062627 ENSDART00000149153 N/A N/A N/A 1.846±0.98 N/A N/A 0.206±0.06 0.126±0.02 0.007±0.00 N/A 0.107±0.00 N/A N/A N/A
ENSDARG00000097056 ENSDART00000153814 N/A N/A N/A 0.241±0.11 N/A N/A 0.166±0.05 0.049±0.03 N/A N/A N/A N/A N/A N/A
ENSDART00000154169 N/A N/A N/A 1.648±0.55 N/A N/A 0.915±0.76 0.638±0.40 0.080±0.00 N/A 0.256±0.00 N/A N/A N/A
ENSDARG00000097304 ENSDART00000156055 N/A N/A N/A 0.056±0.03 N/A N/A 0.017±0.00 0.064±0.01 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035296 ENSMUST00000077954 2.240±0.12 N/A 5.140±0.00 N/A 12.741±1.14 N/A 75.194±18.75 0.742±0.39 N/A 4.701±2.06 58.798±4.63 1.110±0.35 N/A N/A
ENSMUST00000121148 N/A N/A N/A N/A N/A 0.256±0.00 N/A N/A N/A N/A N/A 1.246±0.38 N/A N/A
ENSMUST00000129886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000048279 ENSMUST00000089394 N/A 0.160±0.00 N/A N/A N/A 0.119±0.00 N/A N/A N/A N/A N/A 0.281±0.00 N/A N/A
ENSMUST00000119509 N/A 0.210±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.361±0.00 N/A N/A
ENSMUST00000119943 0.644±0.19 0.166±0.04 3.148±0.00 2.913±0.30 N/A 0.301±0.07 1.668±0.08 0.143±0.06 0.632±0.86 N/A 1.164±0.19 0.647±0.41 0.514±0.25 0.691±0.22
ENSMUST00000121091 N/A 0.267±0.09 N/A N/A N/A 0.182±0.00 N/A 0.045±0.00 0.067±0.05 N/A N/A 0.527±0.00 N/A N/A
ENSMUST00000150222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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