C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sarcoglycan, gamma (dystrophin-associated glycoprotein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077954 Sgcg-001 ENSMUSG00000035296 10090 - 14:61221059-61258490 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartKidneyLungMuscleOvaryENSMUST00000077954
Transcript ID Adipose Bladder Breast Heart Kidney Lung Muscle Ovary
ENSMUST00000077954 2.240±0.12 5.140±0.00 12.741±1.14 75.194±18.75 0.742±0.39 4.701±2.06 58.798±4.63 1.110±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZO CIL_0007ZO_0002 VISTA 14:60704739-61305741
CIL_0008P8 CIL_0008P8_0002 VISTA 14:60705067-61305254
CIL_0005YX CIL_0005YX_0002 CGP 14:61138457-61258490

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005887 TAS integral component of plasma membrane
GO:0016011 IDA dystroglycan complex
GO:0016012 IDA sarcoglycan complex
GO:0042383 IDA sarcolemma
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000218867 SGCG-001 protein_coding Homo_sapiens 0 787

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