C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA E230008N13 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035539 E230008N13Rik 10090 + 4:45890303-45950774 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000127261 E230008N13Rik-001 45890303-45909567 processed_transcript
  ENSMUST00000149903 E230008N13Rik-002 45890852-45950767 protein_coding
  ENSMUST00000151024 E230008N13Rik-003 45914369-45921936 protein_coding
  ENSMUST00000178561 E230008N13Rik-201 45890303-45950774 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000127261ENSMUST00000149903ENSMUST00000151024ENSMUST00000178561
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000127261 N/A 0.137±0.09 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A
ENSMUST00000149903 0.007±0.00 0.041±0.00 0.009±0.00 0.034±0.00 0.031±0.02 0.055±0.05 N/A 0.018±0.01 N/A 0.020±0.01 0.762±0.38 0.018±0.01 8.873±0.00
ENSMUST00000151024 0.048±0.01 0.283±0.10 N/A N/A N/A N/A 0.220±0.00 N/A N/A N/A N/A 0.011±0.00 N/A
ENSMUST00000178561 N/A N/A 0.013±0.00 0.102±0.04 0.022±0.00 N/A 0.113±0.02 0.003±0.00 0.748±0.15 N/A 1.592±1.08 0.015±0.00 8.120±1.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086Q CIL_00086Q_0002 VISTA 4:45528456-46131469
CIL_0002JB CIL_0002JB_0002 CGP 4:45890303-46034761

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032372 CCDC180 coiled-coil domain containing 180 protein_coding Danio_rerio
ENSG00000197816 CCDC180 coiled-coil domain containing 180 protein_coding Homo_sapiens

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