C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002JB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000197816-ENSG00000196116 CGP 9606 9:97307304-97496125
GeneTranscriptPositionBiotype
ENSG00000196116 (TDRD7)
tudor domain containing 7 		ENST00000355295 (TDRD7-001) 97411950-97496125 protein_coding
ENST00000492428 (TDRD7-002) 97480342-97482946 processed_transcript
ENSG00000197816 (CCDC180)
coiled-coil domain containing 180 		ENST00000460482 (CCDC180-007) 97307361-97345813 processed_transcript
ENST00000471314 (CCDC180-003) 97354617-97358026 processed_transcript
ENST00000472746 (CCDC180-004) 97307304-97309493 retained_intron
ENST00000483504 (CCDC180-014) 97365165-97369944 processed_transcript
ENST00000487976 (CCDC180-006) 97371872-97376933 retained_intron
ENST00000494917 (CCDC180-002) 97307321-97343643 retained_intron
ENST00000526038 (CCDC180-008) 97369278-97378524 retained_intron
ENST00000527182 (CCDC180-013) 97362295-97364659 processed_transcript
ENST00000528678 (CCDC180-009) 97330398-97350503 processed_transcript
ENST00000529487 (CCDC180-001) 97307659-97376933 protein_coding
ENST00000530011 (CCDC180-010) 97330533-97350554 processed_transcript
ENST00000530551 (CCDC180-012) 97371340-97376818 retained_intron
ENST00000534189 (CCDC180-011) 97370013-97371975 retained_intron
ENSG00000221269 (MIR1302-8)
microRNA 1302-8 		ENST00000408342 (MIR1302-8-201) 97363554-97363681 miRNA
ENSG00000228957 (RP11-23J9.3)
 ENST00000430691 (RP11-23J9.3-001) 97386240-97396112 unprocessed_pseudogene
ENSG00000255036 (RP11-23J9.4)
 ENST00000357054 (RP11-23J9.4-201) 97250829-97377098 processed_transcript
ENST00000375206 (RP11-23J9.4-001) 97238497-97377287 processed_transcript
ENST00000529787 (RP11-23J9.4-004) 97290592-97376933 processed_transcript
ENST00000532526 (RP11-23J9.4-003) 97250829-97377098 processed_transcript
ENST00000534123 (RP11-23J9.4-002) 97250829-97377098 processed_transcript
CIL_0002JB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035539-ENSMUSG00000035517 CGP 10090 4:45890303-46034761
GeneTranscriptPositionBiotype
ENSMUSG00000035517 (Tdrd7)
tudor domain containing 7 		ENSMUST00000102929 (Tdrd7-002) 45972233-46034761 protein_coding
ENSMUST00000107777 (Tdrd7-001) 45965334-46034761 protein_coding
ENSMUST00000140270 (Tdrd7-004) 45990163-46005592 processed_transcript
ENSMUST00000151422 (Tdrd7-003) 45972834-45987622 processed_transcript
ENSMUST00000155936 (Tdrd7-005) 46026101-46034761 processed_transcript
ENSMUSG00000035539 (E230008N13Rik)
RIKEN cDNA E230008N13 gene 		ENSMUST00000127261 (E230008N13Rik-001) 45890303-45909567 processed_transcript
ENSMUST00000149903 (E230008N13Rik-002) 45890852-45950767 protein_coding
ENSMUST00000151024 (E230008N13Rik-003) 45914369-45921936 protein_coding
ENSMUST00000178561 (E230008N13Rik-201) 45890303-45950774 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002JB_0001ENSG00000196116ENST00000355295ENST00000492428ENSG00000197816ENST00000460482ENST00000471314ENST00000472746ENST00000483504ENST00000487976ENST00000494917ENST00000526038ENST00000527182ENST00000528678ENST00000529487ENST00000530011ENST00000530551ENST00000534189ENSG00000221269ENST00000408342ENSG00000228957ENST00000430691ENSG00000255036ENST00000357054ENST00000375206ENST00000529787ENST00000532526ENST00000534123CIL_0002JB_0002ENSMUSG00000035517ENSMUST00000102929ENSMUST00000107777ENSMUST00000140270ENSMUST00000151422ENSMUST00000155936ENSMUSG00000035539ENSMUST00000127261ENSMUST00000149903ENSMUST00000151024ENSMUST00000178561
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002JB_0001ENSG00000196116ENST00000355295ENSG00000197816ENST00000460482ENST00000487976ENST00000494917ENST00000526038ENST00000527182ENST00000529487ENST00000534189ENSG00000221269ENST00000408342ENSG00000228957ENST00000430691ENSG00000255036ENST00000357054ENST00000375206ENST00000529787ENST00000532526ENST00000534123CIL_0002JB_0002ENSMUSG00000035517ENSMUST00000102929ENSMUST00000107777ENSMUSG00000035539ENSMUST00000127261ENSMUST00000149903ENSMUST00000151024ENSMUST00000178561
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000196116 ENST00000355295 2.304±0.00 2.427±0.00 0.633±0.00 1.980±1.58 2.202±0.33 4.398±0.40 1.190±0.80 3.252±0.00 0.938±0.15 2.548±0.96 2.219±0.00 3.296±0.68 3.010±0.75 25.095±2.35
ENST00000492428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197816 ENST00000460482 0.121±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.155±0.00 N/A
ENST00000471314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487976 N/A N/A N/A N/A 0.536±0.24 0.129±0.00 N/A 0.318±0.00 N/A N/A N/A 0.736±0.14 0.059±0.00 N/A
ENST00000494917 N/A N/A N/A N/A N/A 0.518±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526038 N/A 0.346±0.00 N/A N/A N/A 0.056±0.00 N/A N/A N/A N/A 0.035±0.00 0.316±0.04 N/A N/A
ENST00000527182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.558±0.00 N/A N/A N/A
ENST00000528678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529487 0.161±0.00 0.787±0.00 N/A 0.737±0.19 0.358±0.00 N/A N/A N/A N/A 1.427±0.00 N/A 1.385±0.28 0.190±0.02 18.716±5.62
ENST00000530011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.345±0.00 1.289±0.00 110.302±0.00
ENSG00000221269 ENST00000408342 0.228±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.099±0.00
ENSG00000228957 ENST00000430691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.100±0.00
ENSG00000255036 ENST00000357054 0.061±0.00 N/A N/A N/A 0.289±0.00 0.217±0.00 N/A 0.235±0.00 N/A N/A N/A N/A N/A N/A
ENST00000375206 N/A N/A N/A 0.625±0.00 N/A 0.181±0.00 N/A N/A N/A 0.552±0.00 N/A 0.493±0.00 N/A N/A
ENST00000529787 N/A 0.846±0.00 N/A N/A 0.213±0.00 N/A N/A 0.226±0.00 0.052±0.00 N/A N/A 0.576±0.00 N/A N/A
ENST00000532526 N/A N/A N/A N/A 0.263±0.00 N/A N/A N/A N/A N/A N/A 0.485±0.12 0.119±0.02 8.251±0.00
ENST00000534123 N/A N/A N/A N/A N/A 0.107±0.00 0.295±0.00 0.207±0.00 0.388±0.00 N/A N/A 0.246±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035517 ENSMUST00000102929 9.469±0.88 1.535±0.60 8.153±1.42 4.515±1.37 4.667±1.86 5.366±2.87 2.516±0.37 6.741±1.14 4.474±1.52 8.950±1.60 2.479±0.62 5.188±2.35 6.793±2.98 34.573±9.09
ENSMUST00000107777 N/A 2.559±1.33 N/A N/A 0.693±0.00 3.011±1.43 N/A N/A 1.064±0.55 1.336±0.00 N/A 3.575±2.54 6.153±1.54 N/A
ENSMUST00000140270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035539 ENSMUST00000127261 N/A 0.137±0.09 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A
ENSMUST00000149903 0.007±0.00 0.041±0.00 0.009±0.00 0.034±0.00 0.031±0.02 N/A 0.055±0.05 N/A 0.018±0.01 N/A 0.020±0.01 0.762±0.38 0.018±0.01 8.873±0.00
ENSMUST00000151024 0.048±0.01 0.283±0.10 N/A N/A N/A N/A N/A 0.220±0.00 N/A N/A N/A N/A 0.011±0.00 N/A
ENSMUST00000178561 N/A N/A 0.013±0.00 0.102±0.04 0.022±0.00 N/A N/A 0.113±0.02 0.003±0.00 0.748±0.15 N/A 1.592±1.08 0.015±0.00 8.120±1.70

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