C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat and fibronectin type III domain containing 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035653 Lrfn5 10090 + 12:61523150-61858342 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055815 Lrfn5-004 61523948-61845258 protein_coding
  ENSMUST00000119481 Lrfn5-001 61523948-61857928 protein_coding
  ENSMUST00000130887 Lrfn5-002 61523150-61605008 processed_transcript
  ENSMUST00000138980 Lrfn5-003 61523167-61671824 processed_transcript
  ENSMUST00000189933 Lrfn5-005 61856268-61858342 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055815ENSMUST00000119481ENSMUST00000130887ENSMUST00000138980
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055815 N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000119481 N/A N/A 0.060±0.01 8.996±2.16 0.016±0.01 0.073±0.04 0.008±0.00 N/A 0.031±0.02 N/A 0.024±0.01 0.029±0.00 0.006±0.00 N/A
ENSMUST00000130887 N/A 0.041±0.00 0.036±0.01 7.553±0.68 0.050±0.00 0.067±0.02 0.021±0.00 0.023±0.00 0.028±0.02 0.024±0.00 0.056±0.02 0.112±0.07 0.005±0.00 0.023±0.00
ENSMUST00000138980 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VL CIL_0003VL_0002 CGP 12:59200655-61858342

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071230 LRFN5 (1 of 2) leucine rich repeat and fibronectin type III domain containing 5 protein_coding Danio_rerio
ENSDARG00000079396 LRFN5 (2 of 2) leucine rich repeat and fibronectin type III domain containing 5 protein_coding Danio_rerio
ENSG00000165379 LRFN5 leucine rich repeat and fibronectin type III domain containing 5 protein_coding Homo_sapiens

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