C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003VL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165355-ENSG00000165379 CGP 9606 14:39397669-41904549
GeneTranscriptPositionBiotype
ENSG00000165355 (FBXO33)
F-box protein 33 		ENST00000298097 (FBXO33-001) 39397669-39432500 protein_coding
ENST00000554190 (FBXO33-002) 39399566-39431875 protein_coding
ENST00000554932 (FBXO33-003) 39431772-39432466 protein_coding
ENSG00000165379 (LRFN5)
leucine rich repeat and fibronectin type III domain containing 5 		ENST00000298119 (LRFN5-001) 41607570-41904549 protein_coding
ENST00000553926 (LRFN5-004) 41608378-41610127 processed_transcript
ENST00000554120 (LRFN5-006) 41608415-41904549 protein_coding
ENST00000554171 (LRFN5-003) 41699427-41904549 protein_coding
ENST00000555279 (LRFN5-005) 41608269-41766962 processed_transcript
ENSG00000251363 (RP11-129M6.1)
 ENST00000515218 (RP11-129M6.1-001) 40954898-40975877 lincRNA
ENSG00000251858 (SNORA31)
Small nucleolar RNA SNORA31 		ENST00000516049 (SNORA31.1-204) 41594463-41594591 snoRNA
ENSG00000258385 (RP11-629F19.1)
 ENST00000554380 (RP11-629F19.1-001) 41296286-41298734 processed_pseudogene
ENSG00000258418 (RP11-662J14.1)
 ENST00000553464 (RP11-662J14.1-001) 40386252-40386794 lincRNA
ENSG00000258480 (RP11-662J14.2)
 ENST00000557101 (RP11-662J14.2-001) 40387558-40389140 lincRNA
ENSG00000258526 (RP11-111A21.1)
 ENST00000554328 (RP11-111A21.1-004) 39474840-39513780 lincRNA
ENST00000556620 (RP11-111A21.1-002) 39474856-39492770 lincRNA
ENST00000557197 (RP11-111A21.1-003) 39474935-39493512 lincRNA
ENSG00000258536 (RP11-1053O12.1)
 ENST00000553366 (RP11-1053O12.1-001) 41742639-41742963 processed_pseudogene
ENSG00000258636 (CTD-2298J14.2)
 ENST00000557067 (CTD-2298J14.2-001) 41587861-41604856 lincRNA
ENSG00000279972 (RP11-354G16.1)
 ENST00000624230 (RP11-354G16.1-001) 41514972-41515350 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0003VL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035329-ENSMUSG00000035653 CGP 10090 12:59200655-61858342
GeneTranscriptPositionBiotype
ENSMUSG00000035329 (Fbxo33)
F-box protein 33 		ENSMUST00000043204 (Fbxo33-001) 59200655-59219725 protein_coding
ENSMUST00000160204 (Fbxo33-002) 59200658-59205689 retained_intron
ENSMUST00000161351 (Fbxo33-003) 59204552-59218801 protein_coding
ENSMUST00000162855 (Fbxo33-004) 59200657-59204436 protein_coding
ENSMUSG00000035653 (Lrfn5)
leucine rich repeat and fibronectin type III domain containing 5 		ENSMUST00000055815 (Lrfn5-004) 61523948-61845258 protein_coding
ENSMUST00000119481 (Lrfn5-001) 61523948-61857928 protein_coding
ENSMUST00000130887 (Lrfn5-002) 61523150-61605008 processed_transcript
ENSMUST00000138980 (Lrfn5-003) 61523167-61671824 processed_transcript
ENSMUST00000189933 (Lrfn5-005) 61856268-61858342 retained_intron
ENSMUSG00000098029 (Gm7745)
predicted gene 7745 		ENSMUST00000182235 (Gm7745-001) 61353702-61354674 processed_pseudogene
ENSMUSG00000098229 (Gm7719)
predicted gene 7719 		ENSMUST00000182374 (Gm7719-001) 59291964-59292938 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VL_0001ENSG00000165355ENST00000298097ENST00000554190ENST00000554932ENSG00000165379ENST00000298119ENST00000553926ENST00000554120ENST00000554171ENST00000555279ENSG00000251363ENST00000515218ENSG00000251858ENST00000516049ENSG00000258385ENST00000554380ENSG00000258418ENST00000553464ENSG00000258480ENST00000557101ENSG00000258526ENST00000554328ENST00000556620ENST00000557197ENSG00000258536ENST00000553366ENSG00000258636ENST00000557067ENSG00000279972ENST00000624230CIL_0003VL_0002ENSMUSG00000035329ENSMUST00000043204ENSMUST00000160204ENSMUST00000161351ENSMUST00000162855ENSMUSG00000035653ENSMUST00000055815ENSMUST00000119481ENSMUST00000130887ENSMUST00000138980ENSMUST00000189933ENSMUSG00000098029ENSMUST00000182235ENSMUSG00000098229ENSMUST00000182374
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VL_0001ENSG00000165355ENST00000298097ENSG00000165379ENST00000298119ENST00000554120ENST00000554171ENST00000555279ENSG00000251363ENST00000515218ENSG00000251858ENST00000516049ENSG00000258385ENST00000554380ENSG00000258418ENST00000553464ENSG00000258480ENST00000557101ENSG00000258526ENST00000554328ENST00000556620ENST00000557197ENSG00000258536ENST00000553366ENSG00000258636ENST00000557067ENSG00000279972ENST00000624230CIL_0003VL_0002ENSMUSG00000035329ENSMUST00000043204ENSMUST00000160204ENSMUST00000161351ENSMUSG00000035653ENSMUST00000055815ENSMUST00000119481ENSMUST00000130887ENSMUST00000138980ENSMUSG00000098029ENSMUST00000182235ENSMUSG00000098229ENSMUST00000182374
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000165355 ENST00000298097 0.390±0.00 N/A N/A 5.639±0.00 N/A 0.804±0.00 1.078±0.82 3.301±0.00 1.790±0.52 2.018±0.40 0.402±0.07 1.804±0.45 0.912±0.39 4.753±0.37
ENST00000554190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165379 ENST00000298119 0.176±0.00 0.120±0.00 N/A 3.978±0.68 0.596±0.30 0.307±0.16 0.115±0.00 0.266±0.00 N/A 0.532±0.00 N/A 0.198±0.17 0.179±0.03 0.522±0.09
ENST00000553926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554120 0.173±0.00 N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A
ENST00000554171 N/A N/A 0.061±0.00 N/A N/A N/A 0.047±0.00 N/A N/A 0.042±0.00 N/A 0.006±0.00 N/A N/A
ENST00000555279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A N/A
ENSG00000251363 ENST00000515218 N/A 0.013±0.00 N/A N/A 0.012±0.00 N/A 0.049±0.00 N/A N/A 0.041±0.00 N/A N/A 0.079±0.02 0.032±0.02
ENSG00000251858 ENST00000516049 N/A N/A N/A 0.138±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258385 ENST00000554380 N/A 0.003±0.00 N/A N/A 0.003±0.00 N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A 0.009±0.00
ENSG00000258418 ENST00000553464 N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000258480 ENST00000557101 0.064±0.00 0.062±0.00 N/A 0.127±0.02 0.019±0.00 0.074±0.00 N/A N/A 0.053±0.00 0.086±0.00 N/A 0.040±0.01 N/A 0.019±0.00
ENSG00000258526 ENST00000554328 N/A N/A N/A N/A N/A 0.071±0.00 N/A 0.039±0.00 N/A N/A N/A 0.126±0.08 0.035±0.00 3.246±2.15
ENST00000556620 0.028±0.00 N/A N/A 0.029±0.00 N/A N/A N/A 0.054±0.00 0.068±0.00 N/A N/A 0.060±0.00 N/A 2.368±0.96
ENST00000557197 N/A N/A N/A N/A N/A N/A 0.062±0.00 N/A 0.077±0.00 0.039±0.00 0.741±0.00 N/A N/A N/A
ENSG00000258536 ENST00000553366 N/A N/A N/A N/A N/A N/A 0.291±0.00 N/A 0.196±0.00 N/A N/A N/A N/A 0.078±0.00
ENSG00000258636 ENST00000557067 0.299±0.00 0.298±0.00 N/A 0.467±0.01 0.089±0.04 0.405±0.10 0.085±0.00 0.252±0.06 N/A N/A 0.163±0.00 0.219±0.13 0.081±0.00 0.274±0.02
ENSG00000279972 ENST00000624230 N/A N/A N/A N/A 0.090±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035329 ENSMUST00000043204 2.723±1.19 10.913±4.13 2.700±1.09 2.772±0.72 3.155±1.43 2.883±1.34 0.805±0.22 2.844±0.65 2.223±0.91 2.571±0.68 0.519±0.22 4.540±1.78 2.592±0.64 1.614±0.92
ENSMUST00000160204 N/A N/A N/A 0.537±0.00 0.467±0.03 N/A N/A N/A 1.080±0.00 1.632±0.00 N/A N/A N/A 0.796±0.00
ENSMUST00000161351 3.119±1.00 N/A N/A 6.814±0.00 4.181±1.33 N/A 1.773±0.43 2.369±0.00 N/A 3.895±1.11 0.520±0.00 9.961±2.48 5.241±0.00 3.370±0.12
ENSMUST00000162855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035653 ENSMUST00000055815 N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000119481 N/A N/A 0.060±0.01 8.996±2.16 0.016±0.01 0.073±0.04 0.008±0.00 N/A 0.031±0.02 N/A 0.024±0.01 0.029±0.00 0.006±0.00 N/A
ENSMUST00000130887 N/A 0.041±0.00 0.036±0.01 7.553±0.68 0.050±0.00 0.067±0.02 0.021±0.00 0.023±0.00 0.028±0.02 0.024±0.00 0.056±0.02 0.112±0.07 0.005±0.00 0.023±0.00
ENSMUST00000138980 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A
ENSMUST00000189933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098029 ENSMUST00000182235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.937±0.87
ENSMUSG00000098229 ENSMUST00000182374 N/A N/A 0.008±0.00 N/A 0.063±0.00 N/A N/A N/A N/A N/A N/A 0.186±0.00 N/A N/A

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