C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat and fibronectin type III domain containing 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165379 LRFN5 9606 + 14:41607570-41904549 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298119 LRFN5-001 41607570-41904549 protein_coding
  ENST00000553926 LRFN5-004 41608378-41610127 processed_transcript
  ENST00000554120 LRFN5-006 41608415-41904549 protein_coding
  ENST00000554171 LRFN5-003 41699427-41904549 protein_coding
  ENST00000555279 LRFN5-005 41608269-41766962 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000298119ENST00000554120ENST00000554171ENST00000555279
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000298119 0.176±0.00 0.120±0.00 N/A 3.978±0.68 0.596±0.30 0.307±0.16 0.115±0.00 0.266±0.00 N/A 0.532±0.00 0.198±0.17 0.179±0.03 0.522±0.09
ENST00000554120 0.173±0.00 N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A
ENST00000554171 N/A N/A 0.061±0.00 N/A N/A N/A 0.047±0.00 N/A N/A 0.042±0.00 0.006±0.00 N/A N/A
ENST00000555279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VL CIL_0003VL_0001 CGP 14:39397669-41904549

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071230 LRFN5 (1 of 2) leucine rich repeat and fibronectin type III domain containing 5 protein_coding Danio_rerio
ENSDARG00000079396 LRFN5 (2 of 2) leucine rich repeat and fibronectin type III domain containing 5 protein_coding Danio_rerio
ENSMUSG00000035653 Lrfn5 leucine rich repeat and fibronectin type III domain containing 5 protein_coding Mus_musculus

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