C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: strawberry notch homolog 2 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035673 Sbno2 10090 - 10:80057416-80102698 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042771 Sbno2-201 80057416-80102698 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042771
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042771 8.453±1.16 8.637±3.03 10.905±4.18 4.007±1.79 19.535±15.81 25.661±13.36 1.480±0.20 8.406±2.09 3.809±2.32 14.244±7.16 1.355±0.36 13.427±7.57 5.127±2.23 3.017±0.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_0000QT CIL_0000QT_0002 CGP 10:80047166-80102698
CIL_0000QW CIL_0000QW_0002 CGP 10:80057416-80130682

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002281 IMP macrophage activation involved in immune response
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0006351 IEA transcription, DNA-templated
GO:0030282 IMP bone mineralization
GO:0030316 IMP osteoclast differentiation
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0050727 IMP regulation of inflammatory response
GO:0061430 IMP bone trabecula morphogenesis
GO:0072674 IMP multinuclear osteoclast differentiation
GO:0072675 IMP osteoclast fusion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003882 sbno2a strawberry notch homolog 2a protein_coding Danio_rerio
ENSDARG00000016188 SBNO2 (2 of 2) strawberry notch homolog 2 (Drosophila) protein_coding Danio_rerio
ENSG00000064932 SBNO2 strawberry notch homolog 2 (Drosophila) protein_coding Homo_sapiens

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