C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: strawberry notch homolog 2 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000064932 SBNO2 9606 - 19:1107636-1174283 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361757 SBNO2-001 1107636-1174283 protein_coding
  ENST00000438103 SBNO2-003 1107637-1132221 protein_coding
  ENST00000586109 SBNO2-015 1109501-1111062 retained_intron
  ENST00000587024 SBNO2-002 1107641-1174256 protein_coding
  ENST00000587655 SBNO2-011 1127710-1169146 protein_coding
  ENST00000587673 SBNO2-014 1108565-1111605 retained_intron
  ENST00000590176 SBNO2-010 1127661-1173774 protein_coding
  ENST00000590446 SBNO2-013 1117396-1120128 retained_intron
  ENST00000590998 SBNO2-012 1127660-1155136 protein_coding
  ENST00000592222 SBNO2-005 1115356-1132221 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361757ENST00000438103ENST00000586109ENST00000587024ENST00000587673ENST00000590446ENST00000592222
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361757 12.546±0.00 18.897±0.00 N/A 3.190±0.00 7.140±0.00 4.004±0.00 0.994±0.92 0.727±0.00 3.407±3.03 1.984±0.00 12.749±0.00 6.970±0.00 7.812±2.04 10.354±1.83
ENST00000438103 2.618±0.00 29.643±0.00 0.295±0.00 1.294±1.05 1.446±0.00 11.802±0.00 1.921±0.00 9.353±0.00 1.189±0.05 33.841±0.00 0.552±0.00 9.350±1.95 5.834±0.83 N/A
ENST00000586109 N/A N/A N/A N/A N/A N/A 0.600±0.00 5.240±0.00 N/A N/A 5.935±0.00 N/A N/A N/A
ENST00000587024 N/A N/A N/A 0.887±0.00 N/A 2.443±2.02 1.759±0.00 4.512±0.00 N/A 11.214±10.72 4.055±0.00 N/A 2.969±0.00 7.900±0.00
ENST00000587673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.698±0.00 N/A 30.824±0.00
ENST00000590446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.507±0.00 N/A N/A N/A
ENST00000592222 N/A N/A 1.835±0.00 0.142±0.00 N/A N/A 0.303±0.00 0.533±0.00 N/A 1.537±0.00 N/A 0.758±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000QT CIL_0000QT_0001 CGP 19:1103926-1174283
CIL_0000QW CIL_0000QW_0001 CGP 19:1107636-1228435

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002281 IMP macrophage activation involved in immune response
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0030282 IEA bone mineralization
GO:0030316 IEA osteoclast differentiation
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050727 IMP regulation of inflammatory response
GO:0061430 IEA bone trabecula morphogenesis
GO:0072674 IEA multinuclear osteoclast differentiation
GO:0072675 IEA osteoclast fusion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003882 sbno2a strawberry notch homolog 2a protein_coding Danio_rerio
ENSDARG00000016188 SBNO2 (2 of 2) strawberry notch homolog 2 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000035673 Sbno2 strawberry notch homolog 2 (Drosophila) protein_coding Mus_musculus

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