C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: strawberry notch homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042771 Sbno2-201 ENSMUSG00000035673 10090 - 10:80057416-80102698 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042771
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042771 8.453±1.16 8.637±3.03 10.905±4.18 4.007±1.79 19.535±15.81 25.661±13.36 1.480±0.20 8.406±2.09 3.809±2.32 14.244±7.16 1.355±0.36 13.427±7.57 5.127±2.23 3.017±0.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_0000QT CIL_0000QT_0002 CGP 10:80047166-80102698
CIL_0000QW CIL_0000QW_0002 CGP 10:80057416-80130682

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002281 IMP macrophage activation involved in immune response
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0006351 IEA transcription, DNA-templated
GO:0030282 IMP bone mineralization
GO:0030316 IMP osteoclast differentiation
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0050727 IMP regulation of inflammatory response
GO:0061430 IMP bone trabecula morphogenesis
GO:0072674 IMP multinuclear osteoclast differentiation
GO:0072675 IMP osteoclast fusion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000056032 SBNO2 (2 of 2)-201 protein_coding Danio_rerio 0 568
ENSDART00000137984 SBNO2 (2 of 2)-001 protein_coding Danio_rerio 0 568
ENST00000361757 SBNO2-001 protein_coding Homo_sapiens 0 3212
ENST00000438103 SBNO2-003 protein_coding Homo_sapiens 0 3168
ENST00000586109 SBNO2-015 retained_intron Homo_sapiens 0 337
ENST00000587024 SBNO2-002 protein_coding Homo_sapiens 0 2041
ENST00000587673 SBNO2-014 retained_intron Homo_sapiens 0 505
ENST00000590446 SBNO2-013 retained_intron Homo_sapiens 0 599
ENST00000592222 SBNO2-005 retained_intron Homo_sapiens 0 1428
ENST00000612198 SBNO2-201 protein_coding Homo_sapiens 0 3212
ENST00000622719 SBNO2-202 protein_coding Homo_sapiens 0 3168

Loading