C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GS homeobox 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035946 Gsx2 10090 + 5:75075464-75077893 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040477 Gsx2-001 75075601-75077893 protein_coding
  ENSMUST00000160104 Gsx2-002 75075464-75077625 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryPlacentaENSMUST00000040477ENSMUST00000160104
Transcript ID Brain Liver Ovary Placenta
ENSMUST00000040477 1.260±0.90 0.004±0.00 0.112±0.06 0.055±0.03
ENSMUST00000160104 0.035±0.00 N/A 0.086±0.03 0.014±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R1 CIL_0007R1_0002 VISTA 5:74712461-75313668
CIL_0008IT CIL_0008IT_0002 VISTA 5:74771388-75372201
CIL_0001CN CIL_0001CN_0002 CGP 5:75001026-75077893
CIL_0001CO CIL_0001CO_0002 CGP 5:75075464-75198204

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002087 IMP regulation of respiratory gaseous exchange by neurological system process
GO:0003677 IDA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007389 IMP pattern specification process
GO:0007417 IMP central nervous system development
GO:0007420 IGI brain development
GO:0021527 IGI spinal cord association neuron differentiation
GO:0021544 IGI subpallium development
GO:0021575 IMP hindbrain morphogenesis
GO:0021798 IMP forebrain dorsal/ventral pattern formation
GO:0021889 IMP olfactory bulb interneuron differentiation
GO:0021978 IMP telencephalon regionalization
GO:0030334 IMP regulation of cell migration
GO:0043565 IEA sequence-specific DNA binding
GO:0045747 IMP positive regulation of Notch signaling pathway
GO:0048663 IGI neuron fate commitment
GO:0048665 IMP neuron fate specification
GO:0048714 IMP positive regulation of oligodendrocyte differentiation
GO:0048853 IMP forebrain morphogenesis
GO:0060163 IMP subpallium neuron fate commitment

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043322 gsx2 GS homeobox 2 protein_coding Danio_rerio
ENSG00000180613 GSX2 GS homeobox 2 protein_coding Homo_sapiens

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