C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GS homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040477 Gsx2-001 ENSMUSG00000035946 10090 + 5:75075601-75077893 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryPlacentaENSMUST00000040477
Transcript ID Brain Liver Ovary Placenta
ENSMUST00000040477 1.260±0.90 0.004±0.00 0.112±0.06 0.055±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R1 CIL_0007R1_0002 VISTA 5:74712461-75313668
CIL_0008IT CIL_0008IT_0002 VISTA 5:74771388-75372201
CIL_0001CN CIL_0001CN_0002 CGP 5:75001026-75077893
CIL_0001CO CIL_0001CO_0002 CGP 5:75075464-75198204

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002087 IMP regulation of respiratory gaseous exchange by neurological system process
GO:0003677 IDA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007389 IMP pattern specification process
GO:0007417 IMP central nervous system development
GO:0007420 IGI brain development
GO:0021527 IGI spinal cord association neuron differentiation
GO:0021544 IGI subpallium development
GO:0021575 IMP hindbrain morphogenesis
GO:0021798 IMP forebrain dorsal/ventral pattern formation
GO:0021889 IMP olfactory bulb interneuron differentiation
GO:0021978 IMP telencephalon regionalization
GO:0030334 IMP regulation of cell migration
GO:0043565 IEA sequence-specific DNA binding
GO:0045747 IMP positive regulation of Notch signaling pathway
GO:0048663 IGI neuron fate commitment
GO:0048665 IMP neuron fate specification
GO:0048714 IMP positive regulation of oligodendrocyte differentiation
GO:0048853 IMP forebrain morphogenesis
GO:0060163 IMP subpallium neuron fate commitment

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326902 GSX2-001 protein_coding Homo_sapiens 0 952
ENST00000503800 GSX2-002 protein_coding Homo_sapiens 0 399
ENST00000507839 GSX2-004 processed_transcript Homo_sapiens 0 399
ENST00000548609 GSX2-003 processed_transcript Homo_sapiens 0 531
ENST00000611459 GSX2-201 protein_coding Homo_sapiens 0 952

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