C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: S-phase kinase-associated protein 1A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036309 Skp1a 10090 + 11:52231995-52246858 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037324 Skp1a-001 52232009-52246858 protein_coding
  ENSMUST00000093121 Skp1a-003 52232037-52238424 retained_intron
  ENSMUST00000109072 Skp1a-002 52232189-52246858 protein_coding
  ENSMUST00000116595 Skp1a-005 52236864-52246052 nonsense_mediated_decay
  ENSMUST00000147684 Skp1a-004 52231995-52245094 nonsense_mediated_decay
  ENSMUST00000166537 Skp1a-006 52232037-52245097 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037324ENSMUST00000109072ENSMUST00000166537
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037324 28.379±0.51 19.859±2.86 92.210±3.59 77.944±13.85 19.619±9.35 9.312±3.67 24.922±0.85 35.381±11.55 42.116±12.32 19.884±4.58 89.298±5.83 25.123±33.66 66.733±26.98 3.859±0.00
ENSMUST00000109072 3.241±0.06 4.419±1.02 N/A N/A 1.759±0.04 2.032±1.13 N/A N/A N/A 2.515±0.20 N/A 3.824±1.02 N/A 41.619±17.80
ENSMUST00000166537 N/A N/A N/A 318.606±0.00 N/A N/A N/A N/A N/A N/A N/A 171.053±163.74 310.911±51.81 173.071±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089W CIL_00089W_0002 VISTA 11:51640537-52246109

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IC ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0006511 IC ubiquitin-dependent protein catabolic process
GO:0016567 IEA protein ubiquitination
GO:0019005 ISS SCF ubiquitin ligase complex
GO:0031146 IDA SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031467 IDA Cul7-RING ubiquitin ligase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003151 skp1 S-phase kinase-associated protein 1 protein_coding Danio_rerio
ENSG00000113558 SKP1 S-phase kinase-associated protein 1 protein_coding Homo_sapiens
ENSG00000272772 CTD-2410N18.5 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000430774} protein_coding Homo_sapiens

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