C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: S-phase kinase-associated protein 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000093121 Skp1a-003 ENSMUSG00000036309 10090 + 11:52232037-52238424 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089W CIL_00089W_0002 VISTA 11:51640537-52246109

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328392 SKP1-008 protein_coding Homo_sapiens 3e-36 156
ENST00000353411 SKP1-001 protein_coding Homo_sapiens 5e-35 156
ENST00000429280 SKP1P3-001 processed_pseudogene Homo_sapiens 6e-22 108
ENST00000438081 SKP1P1-001 processed_pseudogene Homo_sapiens 4e-29 132
ENST00000444513 RP11-1018J11.1-001 processed_pseudogene Homo_sapiens 2e-32 143
ENST00000454105 RP11-302K17.4-001 processed_pseudogene Homo_sapiens 1e-27 124
ENST00000506122 RP11-241J12.3-001 processed_pseudogene Homo_sapiens 2e-16 90
ENST00000517625 SKP1-004 protein_coding Homo_sapiens 7e-34 148
ENST00000519054 SKP1-011 nonsense_mediated_decay Homo_sapiens 2e-33 147
ENST00000519321 SKP1-003 protein_coding Homo_sapiens 5e-34 148
ENST00000519718 CTD-2410N18.5-001 protein_coding Homo_sapiens 4e-34 148
ENST00000520417 SKP1-006 protein_coding Homo_sapiens 5e-34 148
ENST00000521216 SKP1-009 protein_coding Homo_sapiens 4e-36 156
ENST00000522552 SKP1-002 protein_coding Homo_sapiens 8e-36 156
ENST00000522855 SKP1-005 protein_coding Homo_sapiens 6e-34 148
ENST00000523359 SKP1-007 protein_coding Homo_sapiens 0.00000000000006 82
ENST00000523966 SKP1-010 nonsense_mediated_decay Homo_sapiens 2e-35 154
ENST00000524288 SKP1-012 retained_intron Homo_sapiens 1e-35 154
ENST00000610519 RP11-1082I11.2-001 processed_pseudogene Homo_sapiens 6e-22 108

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